[PDF][PDF] Lineage motifs as developmental modules for control of cell type proportions

M Tran, A Askary, MB Elowitz - Developmental Cell, 2024 - cell.com
In multicellular organisms, cell types must be produced and maintained in appropriate
proportions. One way this is achieved is through committed progenitor cells or extrinsic …

[PDF][PDF] Alignment of cell lineage trees elucidates genetic programs for the development and evolution of cell types

M Yuan, X Yang, J Lin, X Cao, F Chen, X Zhang, Z Li… - Iscience, 2020 - cell.com
A full understanding of the developmental process requires fine-scale characterization of
cell divisions and cell types, which are naturally organized as the developmental cell …

Systematic reconstruction of the cellular trajectories of mammalian embryogenesis

C Qiu, J Cao, T Li, S Srivatsan, X Huang, D Calderon… - bioRxiv, 2021 - biorxiv.org
Mammalian embryogenesis is characterized by rapid cellular proliferation and
diversification. Within a few weeks, a single cell zygote gives rise to millions of cells …

Quantitative fate mapping: A general framework for analyzing progenitor state dynamics via retrospective lineage barcoding

W Fang, CM Bell, A Sapirstein, S Asami, K Leeper… - Cell, 2022 - cell.com
Natural and induced somatic mutations that accumulate in the genome during development
record the phylogenetic relationships of cells; whether these lineage barcodes capture the …

Studying lineage decision-making in vitro: emerging concepts and novel tools

S Semrau, A van Oudenaarden - Annual review of cell and …, 2015 - annualreviews.org
Correct and timely lineage decisions are critical for normal embryonic development and
homeostasis of adult tissues. Therefore, the search for fundamental principles that underlie …

The evolving concept of cell identity in the single cell era

SA Morris - Development, 2019 - journals.biologists.com
Fueled by recent advances in single cell biology, we are moving away from qualitative and
undersampled assessments of cell identity, toward building quantitative, high-resolution cell …

A statistical method for quantifying progenitor cells reveals incipient cell fate commitments

S Deng, H Gong, D Zhang, M Zhang, X He - Nature Methods, 2024 - nature.com
Quantifying the number of progenitor cells that found an organ, tissue or cell population is of
fundamental importance for understanding the development and homeostasis of a …

Reconstructing cell type evolution across species through cell phylogenies of single-cell RNAseq data

JL Mah, CW Dunn - bioRxiv, 2023 - biorxiv.org
The origin and evolution of cell types has emerged as a key topic in evolutionary biology.
Driven by rapidly accumulating single-cell datasets, recent attempts to infer cell type …

Lineage Landscape: a comprehensive database that records lineage commitment across species

H Yan, R Wang, S Ma, D Huang, S Wang… - Nucleic Acids …, 2023 - academic.oup.com
Commitment to specific cell lineages is critical for mammalian embryonic development.
Lineage determination, differentiation, maintenance, and organogenesis result in diverse life …

A periodic table of cell types

B Xia, I Yanai - Development, 2019 - journals.biologists.com
Single cell biology is currently revolutionizing developmental and evolutionary biology,
revealing new cell types and states in an impressive range of biological systems. With the …