Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a …

OYA Costa, M De Hollander, A Pijl, B Liu, EE Kuramae - Microbiome, 2020 - Springer
Background Cultivation-independent methods, including metagenomics, are tools for the
exploration and discovery of biotechnological compounds produced by microbes in natural …

Effect of long-term farming practices on agricultural soil microbiome members represented by metagenomically assembled genomes (MAGs) and their predicted plant …

J Nelkner, C Henke, TW Lin, W Pätzold, J Hassa… - Genes, 2019 - mdpi.com
To follow the hypothesis that agricultural management practices affect structure and function
of the soil microbiome regarding soil health and plant-beneficial traits, high-throughput (HT) …

Bioinformatic approaches reveal metagenomic characterization of soil microbial community

Z Xu, MA Hansen, LH Hansen, S Jacquiod… - PloS one, 2014 - journals.plos.org
As is well known, soil is a complex ecosystem harboring the most prokaryotic biodiversity on
the Earth. In recent years, the advent of high-throughput sequencing techniques has greatly …

Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

Y Jiang, X Xiong, J Danska, J Parkinson - Microbiome, 2016 - Springer
Background Metatranscriptomics is emerging as a powerful technology for the functional
characterization of complex microbial communities (microbiomes). Use of unbiased RNA …

Biodegradation of plastics: mining of plastic-degrading microorganisms and enzymes using metagenomics approaches

DW Kim, JH Ahn, CJ Cha - Journal of Microbiology, 2022 - Springer
Plastic pollution exacerbated by the excessive use of synthetic plastics and its recalcitrance
has been recognized among the most pressing global threats. Microbial degradation of …

Genome analysis and -omics approaches provide new insights into the biodegradation potential of Rhodococcus

J Zampolli, Z Zeaiter, A Di Canito… - Applied microbiology and …, 2019 - Springer
The past few years observed a breakthrough of genome sequences of bacteria of
Rhodococcus genus with significant biodegradation abilities. Invaluable knowledge from …

Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia

M Martinez-Garcia, DM Brazel, BK Swan, C Arnosti… - PloS one, 2012 - journals.plos.org
Microbial hydrolysis of polysaccharides is critical to ecosystem functioning and is of great
interest in diverse biotechnological applications, such as biofuel production and …

Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas …

J Hassa, I Maus, S Off, A Pühler, P Scherer… - Applied microbiology …, 2018 - Springer
The production of biogas by anaerobic digestion (AD) of agricultural residues, organic
wastes, animal excrements, municipal sludge, and energy crops has a firm place in …

Genome-centric analysis of a thermophilic and cellulolytic bacterial consortium derived from composting

LN Lemos, RV Pereira, RB Quaggio… - Frontiers in …, 2017 - frontiersin.org
Microbial consortia selected from complex lignocellulolytic microbial communities are
promising alternatives to deconstruct plant waste, since synergistic action of different …