Biclustering algorithms for biological data analysis: a survey

SC Madeira, AL Oliveira - IEEE/ACM transactions on …, 2004 - ieeexplore.ieee.org
A large number of clustering approaches have been proposed for the analysis of gene
expression data obtained from microarray experiments. However, the results from the …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

BicAT: a biclustering analysis toolbox

S Barkow, S Bleuler, A Prelić, P Zimmermann… - …, 2006 - academic.oup.com
Besides classical clustering methods such as hierarchical clustering, in recent years
biclustering has become a popular approach to analyze biological data sets, eg gene …

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data

J Xie, A Ma, A Fennell, Q Ma, J Zhao - Briefings in bioinformatics, 2019 - academic.oup.com
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …

[HTML][HTML] Biclustering on expression data: A review

B Pontes, R Giráldez, JS Aguilar-Ruiz - Journal of biomedical informatics, 2015 - Elsevier
Biclustering has become a popular technique for the study of gene expression data,
especially for discovering functionally related gene sets under different subsets of …

A biclustering algorithm based on a bicluster enumeration tree: application to dna microarray data

W Ayadi, M Elloumi, JK Hao - BioData mining, 2009 - Springer
Background In a number of domains, like in DNA microarray data analysis, we need to
cluster simultaneously rows (genes) and columns (conditions) of a data matrix to identify …

Biclustering methods: biological relevance and application in gene expression analysis

A Oghabian, S Kilpinen, S Hautaniemi, E Czeizler - PloS one, 2014 - journals.plos.org
DNA microarray technologies are used extensively to profile the expression levels of
thousands of genes under various conditions, yielding extremely large data-matrices. Thus …

BicPAMS: software for biological data analysis with pattern-based biclustering

R Henriques, FL Ferreira, SC Madeira - BMC bioinformatics, 2017 - Springer
Background Biclustering has been largely applied for the unsupervised analysis of
biological data, being recognised today as a key technique to discover putative modules in …

A systematic comparison and evaluation of biclustering methods for gene expression data

A Prelić, S Bleuler, P Zimmermann, A Wille… - …, 2006 - academic.oup.com
Motivation: In recent years, there have been various efforts to overcome the limitations of
standard clustering approaches for the analysis of gene expression data by grouping genes …

QUBIC: a qualitative biclustering algorithm for analyses of gene expression data

G Li, Q Ma, H Tang, AH Paterson, Y Xu - Nucleic acids research, 2009 - academic.oup.com
Biclustering extends the traditional clustering techniques by attempting to find (all)
subgroups of genes with similar expression patterns under to-be-identified subsets of …