The spatial organization of transcriptional control

A Hafner, A Boettiger - Nature Reviews Genetics, 2023 - nature.com
In animals, the sequences for controlling gene expression do not concentrate just at the
transcription start site of genes, but are frequently thousands to millions of base pairs distal …

Contributions of 3D chromatin structure to cell-type-specific gene regulation

M Schaeffer, M Nollmann - Current opinion in genetics & development, 2023 - Elsevier
Eukaryotic genomes are organized in 3D in a multiscale manner, and different mechanisms
acting at each of these scales can contribute to transcriptional regulation. However, the large …

The three-dimensional organization of mammalian genomes

M Yu, B Ren - Annual review of cell and developmental biology, 2017 - annualreviews.org
Animal development depends on not only the linear genome sequence that embeds millions
of cis-regulatory elements, but also the three-dimensional (3D) chromatin architecture that …

Gene regulation in the 3D genome

Y Li, M Hu, Y Shen - Human molecular genetics, 2018 - academic.oup.com
The spatial organization of the genome is essential for the precise control of gene
expression. Recent advances in sequencing and imaging technologies allow us to explore …

Organization and function of the 3D genome

B Bonev, G Cavalli - Nature Reviews Genetics, 2016 - nature.com
Understanding how chromatin is organized within the nucleus and how this 3D architecture
influences gene regulation, cell fate decisions and evolution are major questions in cell …

Transcriptional control thrown for a loop

P Fraser - Current opinion in genetics & development, 2006 - Elsevier
The relationships among in vivo chromatin structures, chromosome organization and
genome function must be understood in order to reveal the hidden regulatory information in …

Three-dimensional genome architecture: players and mechanisms

A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …

Architectural proteins: regulators of 3D genome organization in cell fate

E Gómez-Díaz, VG Corces - Trends in cell biology, 2014 - cell.com
The relation between alterations in chromatin structure and changes in gene expression
during cell differentiation has served as a paradigm to understand the link between genome …

Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

C Lanctôt, T Cheutin, M Cremer, G Cavalli… - Nature Reviews …, 2007 - nature.com
The regulation of gene expression is mediated by interactions between chromatin and
protein complexes. The importance of where and when these interactions take place in the …

Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance

D Jost, C Vaillant - Nucleic acids research, 2018 - academic.oup.com
Recent progresses of genome-wide chromatin conformation capture techniques have
shown that the genome is segmented into hierarchically organized spatial compartments …