[HTML][HTML] Semantic biomedical resource discovery: a Natural Language Processing framework
P Sfakianaki, L Koumakis, S Sfakianakis… - BMC medical informatics …, 2015 - Springer
Background A plethora of publicly available biomedical resources do currently exist and are
constantly increasing at a fast rate. In parallel, specialized repositories are been developed …
constantly increasing at a fast rate. In parallel, specialized repositories are been developed …
[PDF][PDF] Developing an Application Ontology for Biomedical Resource Annotation and Retrieval: Challenges and Lessons Learned.
The eagle-i project has been developing a semantic search portal for biomedical research
resources. A unique feature of eagle-i is that the data collection and search tools are …
resources. A unique feature of eagle-i is that the data collection and search tools are …
[HTML][HTML] SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes
Background Despite a wide adoption of English in science, a significant amount of
biomedical data are produced in other languages, such as French. Yet a majority of natural …
biomedical data are produced in other languages, such as French. Yet a majority of natural …
NCBO Resource Index: Ontology-based search and mining of biomedical resources
The volume of publicly available data in biomedicine is constantly increasing. However,
these data are stored in different formats and on different platforms. Integrating these data …
these data are stored in different formats and on different platforms. Integrating these data …
Knowledge management in biomedical libraries: A semantic web approach
In recent years, technological advances in high-throughput techniques and efficient data
gathering methods, coupled with a world-wide effort in computational biology, have resulted …
gathering methods, coupled with a world-wide effort in computational biology, have resulted …
[PDF][PDF] Towards semantic annotation of bioinformatics services: building a controlled vocabulary
Most bio text-mining efforts so far have focused on identification of biological, molecular and
chemical entities from the literature to support knowledge acquisition and discovery in the …
chemical entities from the literature to support knowledge acquisition and discovery in the …
Ontology-based information extraction: identifying eligible patients for clinical trials in neurology
P Geibel, M Trautwein, H Erdur, L Zimmermann… - Journal on Data …, 2015 - Springer
In this paper, we present a case study in using ontologies within a system for identifying
patients who are eligible for clinical trials. The main purpose of this clinical research data …
patients who are eligible for clinical trials. The main purpose of this clinical research data …
[HTML][HTML] Ontology-driven indexing of public datasets for translational bioinformatics
The volume of publicly available genomic scale data is increasing. Genomic datasets in
public repositories are annotated with free-text fields describing the pathological state of the …
public repositories are annotated with free-text fields describing the pathological state of the …
[HTML][HTML] Improved characterisation of clinical text through ontology-based vocabulary expansion
Background Biomedical ontologies contain a wealth of metadata that constitutes a
fundamental infrastructural resource for text mining. For several reasons, redundancies exist …
fundamental infrastructural resource for text mining. For several reasons, redundancies exist …
[HTML][HTML] Natural language processing methods and systems for biomedical ontology learning
K Liu, WR Hogan, RS Crowley - Journal of biomedical informatics, 2011 - Elsevier
While the biomedical informatics community widely acknowledges the utility of domain
ontologies, there remain many barriers to their effective use. One important requirement of …
ontologies, there remain many barriers to their effective use. One important requirement of …