Enhancing activity prediction models in drug discovery with the ability to understand human language

P Seidl, A Vall, S Hochreiter… - … on Machine Learning, 2023 - proceedings.mlr.press
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …

CancerGPT for few shot drug pair synergy prediction using large pretrained language models

T Li, S Shetty, A Kamath, A Jaiswal, X Jiang… - NPJ Digital …, 2024 - nature.com
Large language models (LLMs) have been shown to have significant potential in few-shot
learning across various fields, even with minimal training data. However, their ability to …

Few-shot learning for low-data drug discovery

D Vella, JP Ebejer - Journal of Chemical Information and …, 2022 - ACS Publications
The discovery of new hits through ligand-based virtual screening in drug discovery is
essentially a low-data problem, as data acquisition is both difficult and expensive. The …

Few-shot conformal prediction with auxiliary tasks

A Fisch, T Schuster, T Jaakkola… - … on Machine Learning, 2021 - proceedings.mlr.press
We develop a novel approach to conformal prediction when the target task has limited data
available for training. Conformal prediction identifies a small set of promising output …

Context-enriched molecule representations improve few-shot drug discovery

J Schimunek, P Seidl, L Friedrich, D Kuhn… - arXiv preprint arXiv …, 2023 - arxiv.org
A central task in computational drug discovery is to construct models from known active
molecules to find further promising molecules for subsequent screening. However, typically …

Property-aware relation networks for few-shot molecular property prediction

Y Wang, A Abuduweili, Q Yao… - Advances in Neural …, 2021 - proceedings.neurips.cc
Molecular property prediction plays a fundamental role in drug discovery to identify
candidate molecules with target properties. However, molecular property prediction is …

Fs-mol: A few-shot learning dataset of molecules

M Stanley, JF Bronskill, K Maziarz… - Thirty-fifth Conference …, 2021 - openreview.net
Small datasets are ubiquitous in drug discovery as data generation is expensive and can be
restricted for ethical reasons (eg in vivo experiments). A widely applied technique in early …

Low data drug discovery with one-shot learning

H Altae-Tran, B Ramsundar, AS Pappu… - ACS central …, 2017 - ACS Publications
Recent advances in machine learning have made significant contributions to drug discovery.
Deep neural networks in particular have been demonstrated to provide significant boosts in …

Few-shot molecular property prediction via hierarchically structured learning on relation graphs

W Ju, Z Liu, Y Qin, B Feng, C Wang, Z Guo, X Luo… - Neural Networks, 2023 - Elsevier
This paper studies few-shot molecular property prediction, which is a fundamental problem
in cheminformatics and drug discovery. More recently, graph neural network based model …

Cross-domain few-shot learning by representation fusion

T Adler, J Brandstetter, M Widrich, A Mayr, D Kreil… - 2020 - openreview.net
In order to quickly adapt to new data, few-shot learning aims at learning from few examples,
often by using already acquired knowledge. The new data often differs from the previously …