ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization

F Pappalardo, MD Halling-Brown… - Briefings in …, 2009 - academic.oup.com
Vaccine research is a combinatorial science requiring computational analysis of vaccine
components, formulations and optimization. We have developed a framework that combines …

Immunoinformatics and modeling perspective of T cell epitope-based cancer immunotherapy: a holistic picture

S Mishra, S Sinha - Journal of Biomolecular Structure and …, 2009 - Taylor & Francis
Cancer immunotherapy is fast gaining global attention with its unique position as a potential
therapy showing promise in cancer prevention and cure. It utilizes the natural system of …

Modeling the dynamics of virus shedding into the saliva of Epstein-Barr virus positive individuals

GT Huynh, L Rong - Journal of theoretical biology, 2012 - Elsevier
Epstein-Barr virus (EBV) can infect both B cells and epithelial cells. Infection of B cells
enables the virus to persist within a host while infection of epithelial cells is suggested to …

[HTML][HTML] Strategic construction of mRNA vaccine derived from conserved and experimentally validated epitopes of avian influenza type A virus: a reverse vaccinology …

LR Herrera-Ong - Clinical and Experimental Vaccine Research, 2023 - ncbi.nlm.nih.gov
Purpose The development of vaccines that confer protection against multiple avian influenza
A (AIA) virus strains is necessary to prevent the emergence of highly infectious strains that …

A growth model of human papillomavirus type 16 designed from cellular automata and agent-based models

MEE Ospina, JG Perdomo - Artificial intelligence in medicine, 2013 - Elsevier
OBJECTIVE: This paper presents a conceptual model that is developed upon a
characterization of human papillomavirus type 16 (HPV16) which is used to build a …

[PDF][PDF] Agent-based modelling and simulation of the immune system: a review

N Fachada, V Lopes, A Rosa - EPIA 2007-13th Portuguese …, 2007 - academia.edu
Computer simulations play an important role as a tool for predicting and understanding the
behaviour of complex systems. The immune system is one such system, and it is feasible to …

In silico designing of an epitope-based peptide vaccine cocktail against Nipah virus: an Indian population-based epidemiological study

D Chaudhuri, S Majumder, J Datta, K Giri - Archives of Microbiology, 2023 - Springer
Nipah virus, a zoonotic virus from the family Paramyxoviridae has led to significant loss of
lives till date with the most recent outbreak in India reported in Kerala. The virus has a …

A systems biology perspective on rational design of peptide vaccine against virus infections

J Chen, Y Wang, D Guo, B Shen - Current Topics in Medicinal …, 2012 - ingentaconnect.com
With the recent onset of influenza A (H1N1) pandemic, the need for improved vaccines
against virus infections has become an international priority. Strategies for vaccine …

Immunity-based evolutionary algorithm for optimal global container repositioning in liner shipping

EYC Wong, HYK Lau, KL Mak - Or Spectrum, 2010 - Springer
Global container repositioning in liner shipping has always been a challenging problem in
container transportation as the global market in maritime logistics is complex and …

Agent-based modeling and high performance computing

M Alam, V Abedi, J Bassaganya-Riera… - Computational …, 2016 - Elsevier
Agent-based modeling is a computational modeling framework for simulating the
interactions of multiple diverse agents representing a complex system or phenomenon. The …