[HTML][HTML] Using genomics to track global antimicrobial resistance

RS Hendriksen, V Bortolaia, H Tate, GH Tyson… - Frontiers in public …, 2019 - frontiersin.org
The recent advancements in rapid and affordable DNA sequencing technologies have
revolutionized diagnostic microbiology and microbial surveillance. The availability of …

[HTML][HTML] Exploring the human microbiome: the potential future role of next-generation sequencing in disease diagnosis and treatment

MA Malla, A Dubey, A Kumar, S Yadav… - Frontiers in …, 2019 - frontiersin.org
The interaction between the human microbiome and immune system has an effect on
several human metabolic functions and impacts our well-being. Additionally, the interaction …

[HTML][HTML] Reactome pathway analysis: a high-performance in-memory approach

A Fabregat, K Sidiropoulos, G Viteri, O Forner… - BMC …, 2017 - Springer
Background Reactome aims to provide bioinformatics tools for visualisation, interpretation
and analysis of pathway knowledge to support basic research, genome analysis, modelling …

A spectral approach integrating functional genomic annotations for coding and noncoding variants

I Ionita-Laza, K McCallum, B Xu, JD Buxbaum - Nature genetics, 2016 - nature.com
Over the past few years, substantial effort has been put into the functional annotation of
variation in human genome sequences. Such annotations can have a critical role in …

[HTML][HTML] Aspergillus derived mycotoxins in food and the environment: Prevalence, detection, and toxicity

V Navale, KR Vamkudoth, S Ajmera, V Dhuri - Toxicology Reports, 2021 - Elsevier
Aspergillus species are the paramount ubiquitous fungi that contaminate various food
substrates and produce biochemicals known as mycotoxins. Aflatoxins (AFTs), ochratoxin A …

[HTML][HTML] Microbial biodiversity and bioremediation assessment through omics approaches

H Chandran, M Meena, K Sharma - Frontiers in Environmental …, 2020 - frontiersin.org
Industrialization, population burst, and changing lifestyles have resulted in the genesis of
non-degradable pollutants languishing the environment and human health. Biological …

Next‐generation sequencing technologies for environmental DNA research

S Shokralla, JL Spall, JF Gibson… - Molecular …, 2012 - Wiley Online Library
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …

[HTML][HTML] A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome

I Allali, JW Arnold, J Roach, MB Cadenas, N Butz… - BMC microbiology, 2017 - Springer
Abstract Background Advancements in Next Generation Sequencing (NGS) technologies
regarding throughput, read length and accuracy had a major impact on microbiome …

Dual RNA-seq of pathogen and host

AJ Westermann, SA Gorski, J Vogel - Nature Reviews Microbiology, 2012 - nature.com
A comprehensive understanding of host–pathogen interactions requires a knowledge of the
associated gene expression changes in both the pathogen and the host. Traditional, probe …

[HTML][HTML] Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

G Zhang, X Liu, Z Quan, S Cheng, X Xu, S Pan… - Nature …, 2012 - nature.com
Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food
and fodder crop in arid regions and has potential for use as a C 4 biofuel. It is a model …