Computational approaches streamlining drug discovery

AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …

AlphaFold2 and its applications in the fields of biology and medicine

Z Yang, X Zeng, Y Zhao, R Chen - Signal Transduction and Targeted …, 2023 - nature.com
Abstract AlphaFold2 (AF2) is an artificial intelligence (AI) system developed by DeepMind
that can predict three-dimensional (3D) structures of proteins from amino acid sequences …

How accurately can one predict drug binding modes using AlphaFold models?

M Karelina, JJ Noh, RO Dror - Elife, 2023 - elifesciences.org
Computational prediction of protein structure has been pursued intensely for decades,
motivated largely by the goal of using structural models for drug discovery. Recently …

Intrinsically disordered proteins: an overview

R Trivedi, HA Nagarajaram - International journal of molecular sciences, 2022 - mdpi.com
Many proteins and protein segments cannot attain a single stable three-dimensional
structure under physiological conditions; instead, they adopt multiple interconverting …

Alphafold2-rave: From sequence to boltzmann ranking

BP Vani, A Aranganathan, D Wang… - Journal of chemical …, 2023 - ACS Publications
While AlphaFold2 is rapidly being adopted as a new standard in protein structure
predictions, it is limited to single structures. This can be insufficient for the inherently …

New insights into the structure and function of class B1 GPCRs

BP Cary, X Zhang, J Cao, RM Johnson… - Endocrine …, 2023 - academic.oup.com
G protein–coupled receptors (GPCRs) are the largest family of cell surface receptors. Class
B1 GPCRs constitute a subfamily of 15 receptors that characteristically contain large …

G protein-coupled receptors (GPCRs): advances in structures, mechanisms, and drug discovery

M Zhang, T Chen, X Lu, X Lan, Z Chen… - Signal Transduction and …, 2024 - nature.com
G protein-coupled receptors (GPCRs), the largest family of human membrane proteins and
an important class of drug targets, play a role in maintaining numerous physiological …

[HTML][HTML] Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction

S Lee, S Kim, GR Lee, S Kwon, H Woo, C Seok… - Computational and …, 2023 - Elsevier
While deep learning (DL) has brought a revolution in the protein structure prediction field,
still an important question remains how the revolution can be transferred to advances in …

MDTips: a multimodal-data-based drug–target interaction prediction system fusing knowledge, gene expression profile, and structural data

X Xia, C Zhu, F Zhong, L Liu - Bioinformatics, 2023 - academic.oup.com
Motivation Screening new drug–target interactions (DTIs) by traditional experimental
methods is costly and time-consuming. Recent advances in knowledge graphs, chemical …

Developing novel antifungals: lessons from G protein-coupled receptors

V Velazhahan, BL McCann, E Bignell… - Trends in pharmacological …, 2023 - cell.com
Up to 1.5 million people die yearly from fungal disease, but the repertoire of antifungal drug
classes is minimal and the incidence of drug resistance is rising rapidly. This dilemma was …