Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Clinical natural language processing in languages other than English: opportunities and challenges

A Névéol, H Dalianis, S Velupillai, G Savova… - Journal of biomedical …, 2018 - Springer
Background Natural language processing applied to clinical text or aimed at a clinical
outcome has been thriving in recent years. This paper offers the first broad overview of …

Adverse drug event detection using natural language processing: A scoping review of supervised learning methods

RM Murphy, JE Klopotowska, NF de Keizer, KJ Jager… - Plos one, 2023 - journals.plos.org
To reduce adverse drug events (ADEs), hospitals need a system to support them in
monitoring ADE occurrence routinely, rapidly, and at scale. Natural language processing …

A clinical trials corpus annotated with UMLS entities to enhance the access to evidence-based medicine

L Campillos-Llanos, A Valverde-Mateos… - BMC medical informatics …, 2021 - Springer
Background The large volume of medical literature makes it difficult for healthcare
professionals to keep abreast of the latest studies that support Evidence-Based Medicine …

[PDF][PDF] Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual …

A Miranda-Escalada, L Gascó, S Lima-López… - CLEF (Working …, 2022 - ceur-ws.org
There is a pressing need for advanced semantic annotation technologies of medical content,
in particular medical publications, clinical trials and clinical records. Search engines and …

[PDF][PDF] Negation and uncertainty detection in clinical texts written in Spanish: a deep learning-based approach

OS Pabón, O Montenegro, M Torrente… - PeerJ Computer …, 2022 - peerj.com
Detecting negation and uncertainty is crucial for medical text mining applications; otherwise,
extracted information can be incorrectly identified as real or factual events. Although several …

On the linguistic representational power of neural machine translation models

Y Belinkov, N Durrani, F Dalvi, H Sajjad… - Computational …, 2020 - direct.mit.edu
Despite the recent success of deep neural networks in natural language processing and
other spheres of artificial intelligence, their interpretability remains a challenge. We analyze …

[HTML][HTML] Medical concept normalization in social media posts with recurrent neural networks

E Tutubalina, Z Miftahutdinov, S Nikolenko… - Journal of biomedical …, 2018 - Elsevier
Text mining of scientific libraries and social media has already proven itself as a reliable tool
for drug repurposing and hypothesis generation. The task of mapping a disease mention to …

Ten-year prediction of suicide death using Cox regression and machine learning in a nationwide retrospective cohort study in South Korea

SB Choi, W Lee, JH Yoon, JU Won, DW Kim - Journal of affective disorders, 2018 - Elsevier
Background Death by suicide is a preventable public health concern worldwide. The aim of
this study is to investigate the probability of suicide death using baseline characteristics and …

Corpora annotated with negation: An overview

SM Jiménez-Zafra, R Morante… - Computational …, 2020 - aclanthology.org
Negation is a universal linguistic phenomenon with a great qualitative impact on natural
language processing applications. The availability of corpora annotated with negation is …