Deep learning models in detection of dietary supplement adverse event signals from Twitter

Y Wang, Y Zhao, D Schutte, J Bian, R Zhang - Jamia open, 2021 - academic.oup.com
Objective The objective of this study is to develop a deep learning pipeline to detect signals
on dietary supplement-related adverse events (DS AEs) from Twitter. Materials and Methods …

Generative large language models are all-purpose text analytics engines: text-to-text learning is all your need

C Peng, X Yang, A Chen, Z Yu, KE Smith… - Journal of the …, 2024 - academic.oup.com
Objective To solve major clinical natural language processing (NLP) tasks using a unified
text-to-text learning architecture based on a generative large language model (LLM) via …

[PDF][PDF] Guided Attention Network for Concept Extraction.

S Fang, Z Huang, M He, S Tong, X Huang, Y Liu… - IJCAI, 2021 - staff.ustc.edu.cn
Abstract Concept extraction aims to find words or phrases describing a concept from
massive texts. Recently, researchers propose many neural network-based methods to …

Generative entity typing with curriculum learning

S Yuan, D Yang, J Liang, Z Li, J Liu, J Huang… - arXiv preprint arXiv …, 2022 - arxiv.org
Entity typing aims to assign types to the entity mentions in given texts. The traditional
classification-based entity typing paradigm has two unignorable drawbacks: 1) it fails to …

In-domain pre-training improves clinical note generation from doctor-patient conversations

C Grambow, L Zhang, T Schaaf - … of the First Workshop on Natural …, 2022 - aclanthology.org
Summarization of doctor-patient conversations into clinical notes by medical scribes is an
essential process for effective clinical care. Pre-trained transformer models have shown a …

Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias

Z Yu, C Peng, X Yang, C Dang, P Adekkanattu… - Journal of Biomedical …, 2024 - Elsevier
Objective To develop a natural language processing (NLP) package to extract social
determinants of health (SDoH) from clinical narratives, examine the bias among race and …

[HTML][HTML] A comparative study of pre-trained language models for named entity recognition in clinical trial eligibility criteria from multiple corpora

J Li, Q Wei, O Ghiasvand, M Chen, V Lobanov… - BMC Medical Informatics …, 2022 - Springer
Background Clinical trial protocols are the foundation for advancing medical sciences,
however, the extraction of accurate and meaningful information from the original clinical …

SIMD Dataflow Co-optimization for Efficient Neural Networks Inferences on CPUs

C Zhou, Z Hassman, R Xu, D Shah, V Richard… - arXiv preprint arXiv …, 2023 - arxiv.org
We address the challenges associated with deploying neural networks on CPUs, with a
particular focus on minimizing inference time while maintaining accuracy. Our novel …

Narrative Feature or Structured Feature? A Study of Large Language Models to Identify Cancer Patients at Risk of Heart Failure

Z Chen, M Zhang, MM Ahmed, Y Guo… - arXiv preprint arXiv …, 2024 - arxiv.org
Cancer treatments are known to introduce cardiotoxicity, negatively impacting outcomes and
survivorship. Identifying cancer patients at risk of heart failure (HF) is critical to improving …

Extracting adverse drug events from clinical Notes: A systematic review of approaches used

S Modi, KA Kasmiran, NM Sharef… - Journal of Biomedical …, 2024 - Elsevier
Background An adverse drug event (ADE) is any unfavorable effect that occurs due to the
use of a drug. Extracting ADEs from unstructured clinical notes is essential to biomedical text …