Single-cell multiomics analysis for drug discovery

SF Nassar, K Raddassi, T Wu - Metabolites, 2021 - mdpi.com
Given the heterogeneity seen in cell populations within biological systems, analysis of single
cells is necessary for studying mechanisms that cannot be identified on a bulk population …

Applications of single-cell omics to dissect tumor microenvironment

T Guo, W Li, X Cai - Frontiers in genetics, 2020 - frontiersin.org
The recent technical and computational advances in single-cell sequencing technologies
have significantly broaden our toolkit to study tumor microenvironment (TME) directly from …

Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells

KL Wells, CN Miller, AR Gschwind, W Wei, JD Phipps… - Elife, 2020 - elifesciences.org
Medullary thymic epithelial cells (mTECs) play a critical role in central immune tolerance by
mediating negative selection of autoreactive T cells through the collective expression of the …

Integration and gene co-expression network analysis of scRNA-seq transcriptomes reveal heterogeneity and key functional genes in human spermatogenesis

N Salehi, MH Karimi-Jafari, M Totonchi… - Scientific Reports, 2021 - nature.com
Spermatogenesis is a complex process of cellular division and differentiation that begins
with spermatogonia stem cells and leads to functional spermatozoa production. However …

Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects

L Huo, J Jiao Li, L Chen, Z Yu… - Briefings in …, 2021 - academic.oup.com
Single-cell sequencing is a biotechnology to sequence one layer of genomic information for
individual cells in a tissue sample. For example, single-cell DNA sequencing is to sequence …

MTGDC: A multi-scale tensor graph diffusion clustering for single-cell RNA sequencing data

Q Liu, D Wang, L Zhou, J Li… - IEEE/ACM Transactions …, 2023 - ieeexplore.ieee.org
Single-cell RNA sequencing (scRNA-seq) is a new technology that focuses on the
expression levels for each cell to study cell heterogeneity. Thus, new computational …

The construction of a testis transcriptional cell atlas from embryo to adult reveals various somatic cells and their molecular roles

N Salehi, M Totonchi - Journal of Translational Medicine, 2023 - Springer
Background The testis is a complex organ that undergoes extensive developmental
changes from the embryonic stage to adulthood. The development of germ cells, which give …

Variable expression of MECP2, CDKL5, and FMR1 in the human brain: Implications for gene restorative therapies

A Zito, JT Lee - Proceedings of the National Academy of …, 2024 - National Acad Sciences
MECP2, CDKL5, and FMR1 are three X-linked neurodevelopmental genes associated with
Rett, CDKL5-, and fragile-X syndrome, respectively. These syndromes are characterized by …

Activation of AMPK promotes cardiac differentiation by stimulating the autophagy pathway

M Kolahdouzmohammadi, S Pahlavan… - Journal of Cell …, 2023 - Springer
Autophagy, a critical catabolic process for cell survival against different types of stress, has a
role in the differentiation of various cells, such as cardiomyocytes. Adenosine 5ʹ …

Cellular diversity and lineage trajectory: insights from mouse single cell transcriptomes

PPL Tam, JWK Ho - Development, 2020 - journals.biologists.com
Single cell RNA-sequencing (scRNA-seq) technology has matured to the point that it is
possible to generate large single cell atlases of developing mouse embryos. These atlases …