Tumor neoantigens: from basic research to clinical applications

T Jiang, T Shi, H Zhang, J Hu, Y Song, J Wei… - Journal of hematology & …, 2019 - Springer
Tumor neoantigen is the truly foreign protein and entirely absent from normal human
organs/tissues. It could be specifically recognized by neoantigen-specific T cell receptors …

Best practices for bioinformatic characterization of neoantigens for clinical utility

MM Richters, H Xia, KM Campbell, WE Gillanders… - Genome medicine, 2019 - Springer
Neoantigens are newly formed peptides created from somatic mutations that are capable of
inducing tumor-specific T cell recognition. Recently, researchers and clinicians have …

An MRI radiomics approach to predict survival and tumour-infiltrating macrophages in gliomas

G Li, L Li, Y Li, Z Qian, F Wu, Y He, H Jiang, R Li… - Brain, 2022 - academic.oup.com
Preoperative MRI is one of the most important clinical results for the diagnosis and treatment
of glioma patients. The objective of this study was to construct a stable and validatable …

Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities

L Garofano, S Migliozzi, YT Oh, F D'Angelo, RD Najac… - Nature Cancer, 2021 - nature.com
The transcriptomic classification of glioblastoma (GBM) has failed to predict survival and
therapeutic vulnerabilities. A computational approach for unbiased identification of core …

Guadecitabine plus ipilimumab in unresectable melanoma: five-year follow-up and integrated multi-omic analysis in the phase 1b NIBIT-M4 trial

TMR Noviello, AM Di Giacomo, FP Caruso… - Nature …, 2023 - nature.com
Association with hypomethylating agents is a promising strategy to improve the efficacy of
immune checkpoint inhibitors-based therapy. The NIBIT-M4 was a phase Ib, dose-escalation …

[HTML][HTML] Shared immunogenic poly-epitope frameshift mutations in microsatellite unstable tumors

V Roudko, CC Bozkus, T Orfanelli, CB McClain, C Carr… - Cell, 2020 - cell.com
Microsatellite instability-high (MSI-H) tumors are characterized by high tumor mutation
burden and responsiveness to checkpoint blockade. We identified tumor-specific frameshifts …

Midkine activation of CD8+ T cells establishes a neuron–immune–cancer axis responsible for low-grade glioma growth

X Guo, Y Pan, M Xiong, S Sanapala… - Nature …, 2020 - nature.com
Brain tumors (gliomas) are heterogeneous cellular ecosystems, where non-neoplastic
monocytic cells have emerged as key regulators of tumor maintenance and progression …

Transcriptional regulatory networks of tumor-associated macrophages that drive malignancy in mesenchymal glioblastoma

JK Sa, N Chang, HW Lee, HJ Cho, M Ceccarelli… - Genome biology, 2020 - Springer
Background Glioblastoma (GBM) is a complex disease with extensive molecular and
transcriptional heterogeneity. GBM can be subcategorized into four distinct subtypes; tumors …

Immunotherapy in glioblastoma: current shortcomings and future perspectives

B Weenink, PJ French, PAE Sillevis Smitt, R Debets… - Cancers, 2020 - mdpi.com
Glioblastomas are aggressive, fast-growing primary brain tumors. After standard-of-care
treatment with radiation in combination with temozolomide, the overall prognosis of newly …

Computational prediction and validation of tumor-associated neoantigens

V Roudko, B Greenbaum, N Bhardwaj - Frontiers in Immunology, 2020 - frontiersin.org
Tumor progression is typically accompanied by an accumulation of driver and passenger
somatic mutations. A handful of those mutations occur in protein coding genes which …