Single-cell, whole-embryo phenotyping of mammalian developmental disorders

X Huang, J Henck, C Qiu, VKA Sreenivasan… - Nature, 2023 - nature.com
Mouse models are a critical tool for studying human diseases, particularly developmental
disorders. However, conventional approaches for phenotyping may fail to detect subtle …

Building and analyzing metacells in single-cell genomics data

M Bilous, L Hérault, AAG Gabriel… - Molecular Systems …, 2024 - embopress.org
The advent of high-throughput single-cell genomics technologies has fundamentally
transformed biological sciences. Currently, millions of cells from complex biological tissues …

Mapping Cell Atlases at the Single‐Cell Level

F Ye, J Wang, J Li, Y Mei, G Guo - Advanced Science, 2024 - Wiley Online Library
Recent advancements in single‐cell technologies have led to rapid developments in the
construction of cell atlases. These atlases have the potential to provide detailed information …

CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data

CZI Single-Cell Biology, S Abdulla, B Aevermann… - BioRxiv, 2023 - biorxiv.org
Hundreds of millions of single cells have been analyzed to date using high throughput
transcriptomic methods, thanks to technological advances driving the increasingly rapid …

Tracking early mammalian organogenesis–prediction and validation of differentiation trajectories at whole organism scale

I Imaz-Rosshandler, C Rode, C Guibentif… - …, 2024 - journals.biologists.com
Early organogenesis represents a key step in animal development, during which pluripotent
cells diversify to initiate organ formation. Here, we sampled 300,000 single-cell …

[HTML][HTML] Meningioma transcriptomic landscape demonstrates novel subtypes with regional associated biology and patient outcome

HN Thirimanne, D Almiron-Bonnin, N Nuechterlein… - Cell genomics, 2024 - cell.com
Meningiomas, although mostly benign, can be recurrent and fatal. World Health
Organization (WHO) grading of the tumor does not always identify high-risk meningioma …

A transcriptional and regulatory map of mouse somite maturation

X Ibarra-Soria, E Thierion, GF Mok, AE Münsterberg… - Developmental Cell, 2023 - cell.com
The mammalian body plan is shaped by rhythmic segmentation of mesoderm into somites,
which are transient embryonic structures that form down each side of the neural tube. We …

James German and the Quest to Understand Human RECQ Helicase Deficiencies

RJ Monnat Jr - Cells, 2024 - mdpi.com
James German's work to establish the natural history and cancer risk associated with Bloom
syndrome (BS) has had a strong influence on the generation of scientists and clinicians …

Quantitative assessment of single-cell RNA-seq clustering with CONCORDEX

K Jackson, AS Booeshaghi, Á Gálvez-Merchán… - bioRxiv, 2023 - biorxiv.org
Many single cell RNA-sequencing (scRNA-seq) data analysis workflows rely on methods
that embed and visualize the properties of a k-nearest neighbor (kNN) graph in two …

[PDF][PDF] Integrative analysis of single-cell transcriptomics

AF Møller - 2023 - portal.findresearcher.sdu.dk
University of Southern Denmark Integrative analysis of single-cell transcriptomics Møller,
Andreas Fønns Page 1 University of Southern Denmark Integrative analysis of single-cell …