[PDF][PDF] Combinatorial expression motifs in signaling pathways

AA Granados, N Kanrar, MB Elowitz - Cell Genomics, 2024 - cell.com
In animal cells, molecular pathways often comprise families of variant components, such as
ligands or receptors. These pathway components are differentially expressed by different …

A statistical method for quantifying progenitor cells reveals incipient cell fate commitments

S Deng, H Gong, D Zhang, M Zhang, X He - Nature Methods, 2024 - nature.com
Quantifying the number of progenitor cells that found an organ, tissue or cell population is of
fundamental importance for understanding the development and homeostasis of a …

Cellular barcoding: From developmental tracing to anti-tumor drug discovery

Y Wang, X Zhang, Z Wang - Cancer Letters, 2023 - Elsevier
Clonal evolution has gained immense attention in explaining cancer cell status, history, and
fate during cancer progression. Current single-cell or spatial transcriptome technologies …

[PDF][PDF] Npas3 deficiency impairs cortical astrogenesis and induces autistic-like behaviors

Y Li, T Fan, X Li, L Liu, F Mao, Y Li, Z Miao, C Zeng… - Cell reports, 2022 - cell.com
Transcription factors with basic-helix-loop-helix (bHLH) motifs can control neural progenitor
fate determination to neurons and oligodendrocytes. How bHLH transcription factors …

Tracing developmental lineages

B Raj - Nature Methods, 2023 - nature.com
Tracing developmental lineages | Nature Methods Skip to main content Thank you for visiting
nature.com. You are using a browser version with limited support for CSS. To obtain the best …

Mapping cells through time and space with moscot

D Klein, G Palla, M Lange, M Klein, Z Piran, M Gander… - bioRxiv, 2023 - biorxiv.org
Single-cell genomics technologies enable multimodal profiling of millions of cells across
temporal and spatial dimensions. Experimental limitations prevent the measurement of all …

The single-cell transcriptomic atlas and RORA-mediated 3D epigenomic remodeling in driving corneal epithelial differentiation

M Li, H Guo, B Wang, Z Han, S Wu, J Liu… - Nature …, 2024 - nature.com
Proper differentiation of corneal epithelial cells (CECs) from limbal stem/progenitor cells
(LSCs) is required for maintenance of ocular homeostasis and clear vision. Here, using a …

Bayesian inference of rna velocity from multi-lineage single-cell data

Y Gu, D Blaauw, JD Welch - bioRxiv, 2022 - biorxiv.org
Experimental approaches for measuring single-cell gene expression can observe each cell
at only one time point, requiring computational approaches for reconstructing the dynamics …

A single-cell multi-omic atlas spanning the adult rhesus macaque brain

KL Chiou, X Huang, MO Bohlen, S Tremblay… - Science …, 2023 - science.org
Cataloging the diverse cellular architecture of the primate brain is crucial for understanding
cognition, behavior, and disease in humans. Here, we generated a brain-wide single-cell …

[HTML][HTML] A single-cell time-lapse of mouse prenatal development from gastrula to birth

C Qiu, BK Martin, IC Welsh, RM Daza, TM Le, X Huang… - Nature, 2024 - nature.com
The house mouse (Mus musculus) is an exceptional model system, combining genetic
tractability with close evolutionary affinity to humans,. Mouse gestation lasts only 3 weeks …