[HTML][HTML] In vitro cancer models as an approach to identify targetable developmental phenotypes in cancer stem cells

A Biddle - In vitro models, 2023 - Springer
Cancer therapeutics are often highly toxic to the patient, and they often elicit rapid resistance
in the tumour. Recent advances have suggested a potential new way in which we may …

Induction and in silico staging of human gastruloids with neural tube, segmented somites & advanced cell types

N Hamazaki, W Yang, C Kubo, C Qiu, BK Martin… - bioRxiv, 2024 - biorxiv.org
Embryonic organoids are emerging as powerful models for studying early mammalian
development. For example, stem cell-derived'gastruloids' form elongating structures …

Marsupial single-cell transcriptomics provides an atlas of developmental heterochrony

S Menchero, C Barrington, G Alanis-Lobato, W Varsally… - bioRxiv, 2024 - biorxiv.org
Single-cell transcriptomics has revealed conserved and divergent programmes of
organogenesis in mammals, but existing studies have focused on eutherians. Marsupials …

Loss‐of‐Function of p21‐Activated Kinase 2 Links BMP Signaling to Neural Tube Patterning Defects

Y Wang, K Zhang, J Guo, S Yang, X Shi… - Advanced …, 2023 - Wiley Online Library
Closure of the neural tube represents a highly complex and coordinated process, the failure
of which constitutes common birth defects. The serine/threonine kinase p21‐activated …

Capture of Human Neuromesodermal and Posterior Neural Tube Axial Stem Cells

D Kelle, E Ugur, E Rusha, D Shaposhnikov, A Livigni… - bioRxiv, 2024 - biorxiv.org
The spinal cord, nerves, and skeletal muscles arise from neuromesodermal progenitors
(NMPs). We have developed a growth-factor screening strategy, utilizing ES and iPS cells …

Epigenetic delineation of the earliest cardiac lineage segregation by single-cell multi-omics

P Xie, X Jiang, J He, Q Pan, X Yang, Y Zheng, W Fan… - bioRxiv, 2024 - biorxiv.org
The mammalian heart is formed from multiple mesoderm-derived cell lineages. However, it
remains largely unknown when and how the specification of mesoderm towards cardiac …

Integration of hyperspectral imaging and transcriptomics from individual cells with HyperSeq

Y Xie, A Habibalahi, AG Anwer, K Wahi, C Gatt… - bioRxiv, 2024 - biorxiv.org
Microscopy and omics are complementary approaches to probe the molecular state of cells
in health and disease, combining granularity with scalability. While important advances have …

Multi-omics analyses identify transcription factor interplay in corneal epithelial fate determination and disease

JGA Smits, DL Cunha, M Amini, M Bertolin… - bioRxiv, 2022 - biorxiv.org
The homeostasis of the transparent corneal epithelium in the eye is maintained by limbal
stem cells with proper cell fates. A potential disease mechanism underlying corneal opacity …

Epigenetic priming of embryonic lineages in the mammalian epiblast

M Sendra, K McDole, D Jimenez-Carretero… - bioRxiv, 2024 - biorxiv.org
Understanding the diversification of mammalian cell lineages is an essential to embryonic
development, organ regeneration and tissue engineering. Shortly after implantation in the …

StaVia: Spatially and temporally aware cartography with higher order random walks for cell atlases

SV Stassen, M Kobashi, Y Huang, JWK Ho, K Tsia - bioRxiv, 2024 - biorxiv.org
Single-cell atlases are critical for unraveling the cellular basis of health and disease, yet
their sheer diversity and vast data landscape in time and space pose daunting …