Cell fate decision by a morphogen-transcription factor-chromatin modifier axis

D Pei, L Lin, S Fang, Y Fu, Y Qin, X Zhang, J Liu… - 2023 - researchsquare.com
Cell fate decision remains poorly understood at the molecular level. Embryogenesis
provides a unique opportunity to analyse molecular details associated cell fate decisions …

Gene regulation and cis-regulatory element usage during sea urchin development

JM Brandenburg - 2023 - edoc.hu-berlin.de
The emergence of multiple, stable cell lineages from a single-cell zygote is the essence of
multicellular development. Combinatorial transcription factor expression is central to this …

Statistical and Computational Methods for High-Dimensional Genomics Data

Y Ma - 2023 - deepblue.lib.umich.edu
Advancements in transcriptomic technologies have enabled the measurement of gene
expression at single cell resolution and provided spatial localization information on tissues …

Marker-free quantification of progenitor population reveals incipient cell fate commitments

X He, S Deng, H Gong, D Zhang, L Liu - 2022 - researchsquare.com
Quantifying the number of progenitor cells that founder an organ, tissue or cell population is
of fundamental value for understanding the development and homeostasis of a multicellular …

[HTML][HTML] Essential Roles of Exocyst Complex Component 3-like 2 on Cardiovascular Development in Mice

C Watanabe, H Shibuya, Y Ichiyama, E Okamura… - Life, 2022 - mdpi.com
Angiogenesis is a process to generate new blood vessels from pre-existing vessels and to
maintain vessels, and plays critical roles in normal development and disease. However, the …

[图书][B] Molecular Mechanisms Regulating Extraembryonic Endoderm Lineage Potential

PDA Pham - 2022 - search.proquest.com
The separation of embryonic and extraembryonic lineages is a process that has evolved in
amniotes to adapt for fetus survival on land. One of the major roles of the extraembryonic …

[PDF][PDF] Deep Generative and Predictive Modeling of Single Cell RNA-Seq Time Series Data

J Sanders - 2022 - ccmb.brown.edu
Recent advances in single-cell RNA sequencing assays have opened the door to
understanding biological heterogeneity at the cellular level, offering new insights into the …

[PDF][PDF] Time-Aligned Hourglass Gastrulation Models in Rabbit and Mouse

YS Yonatan, AT Amos - academia.edu
The hourglass model describes the convergence of species within the same phylum to a
similar body plan during development, yet the molecular mechanisms underlying this …

Deep Learning Infers Cell-dependent RNA Velocity through a Relay Velocity Model

H Methodist - researchsquare.com
RNA velocity has provided a promising approach for inferring cellular state transition from
single-cell RNA sequencing (scRNA-seq) data. Conventional RNA velocity models infer …