Optimal square detection over general alphabets

J Ellert, P Gawrychowski, G Gourdel - Proceedings of the 2023 Annual ACM …, 2023 - SIAM
Squares (fragments of the form xx, for some string x) are arguably the most natural type of
repetition in strings. The basic algorithmic question concerning squares is to check if a given …

[HTML][HTML] Approximate cover of strings

A Amir, A Levy, R Lubin, E Porat - Theoretical Computer Science, 2019 - Elsevier
Regularities in strings arise in various areas of science, including coding and automata
theory, formal language theory, combinatorics, molecular biology and many others. A …

Can we recover the cover?

A Amir, A Levy, M Lewenstein, R Lubin, B Porat - Algorithmica, 2019 - Springer
Data analysis typically involves error recovery and detection of regularities as two different
key tasks. In this paper we show that there are data types for which these two tasks can be …

Streaming periodicity with mismatches

F Ergün, E Grigorescu, ES Azer, S Zhou - arXiv preprint arXiv:1708.04381, 2017 - arxiv.org
We study the problem of finding all $ k $-periods of a length-$ n $ string $ S $, presented as
a data stream. $ S $ is said to have $ k $-period $ p $ if its prefix of length $ np $ differs from …

On approximating string selection problems with outliers

C Boucher, GM Landau, A Levy, D Pritchard… - Theoretical Computer …, 2013 - Elsevier
Many problems in bioinformatics are about finding strings that approximately represent a
collection of given strings. We look at more general problems where some input strings can …

Periodicity in data streams with wildcards

F Ergün, E Grigorescu, E Sadeqi Azer… - Theory of Computing …, 2020 - Springer
We investigate the problem of detecting periodic trends within a string S of length n, arriving
in the streaming model, containing at most k wildcard characters, where k= o (n). A wildcard …

MBPD: Motif-based period detection

R Otunba, J Lin, P Senin - … and Applications in Knowledge Discovery and …, 2014 - Springer
Massive amounts of data are generated daily at a rapid rate. As a result, the world is faced
with unprecedented challenges and opportunities on managing the ever-growing data …

A comprehensive study on periodicity mining algorithms

M Patel, N Modi - … International Conference on Global Trends in …, 2016 - ieeexplore.ieee.org
Mining knowledge from time series database is always a challenging task due to inherent
complexity. Periodicity mining is one of the methods for analysing time series data in order to …

Quasi-periodicity under mismatch errors

A Amir, A Levy, E Porat - 29th Annual Symposium on …, 2018 - drops.dagstuhl.de
Tracing regularities plays a key role in data analysis for various areas of science, including
coding and automata theory, formal language theory, combinatorics, molecular biology and …

Approximate abelian periods to find motifs in biological sequences

J Mendivelso, C Pino, LF Niño, Y Pinzón - … UK, June 26-28, 2014, Revised …, 2015 - Springer
A problem that has been gaining importance in recent years is that of computing the Abelian
periods in a string. A string w has an Abelian period p if it is a sequence of permutations of a …