[HTML][HTML] Reconstructing cell lineage trees with genomic barcoding: approaches and applications

Z Li, W Yang, P Wu, Y Shan, X Zhang, F Chen… - Journal of Genetics and …, 2024 - Elsevier
In multicellular organisms, developmental history of cell divisions and functional annotation
of terminal cells can be organized into a cell lineage tree (CLT). The reconstruction of the …

STW-MD: a novel spatio-temporal weighting and multi-step decision tree method for considering spatial heterogeneity in brain gene expression data

S Mao, X Huang, R Chen, C Zhang… - Briefings in …, 2024 - academic.oup.com
Gene expression during brain development or abnormal development is a biological
process that is highly dynamic in spatio and temporal. Previous studies have mainly focused …

A tale of too many trees: a conundrum for phylogenetic regression

R Adams, J Roa Lozano, M Duncan, J Green, R Assis… - bioRxiv, 2024 - biorxiv.org
Just exactly which tree (s) should we assume when testing evolutionary hypotheses? This
question has plagued comparative biologists for decades. Given a perfectly estimated tree (if …