Tumour vasculature at single-cell resolution

X Pan, X Li, L Dong, T Liu, M Zhang, L Zhang, X Zhang… - Nature, 2024 - nature.com
Tumours can obtain nutrients and oxygen required to progress and metastasize through the
blood supply. Inducing angiogenesis involves the sprouting of established vessel beds and …

KnockTF 2.0: a comprehensive gene expression profile database with knockdown/knockout of transcription (co-) factors in multiple species

C Feng, C Song, S Song, G Zhang, M Yin… - Nucleic Acids …, 2024 - academic.oup.com
Transcription factors (TFs), transcription co-factors (TcoFs) and their target genes perform
essential functions in diseases and biological processes. KnockTF 2.0 (http://www …

[HTML][HTML] The long noncoding RNA THBS1-AS1 promotes cardiac fibroblast activation in cardiac fibrosis by regulating TGFBR1

J Zhou, G Tian, Y Quan, Q Kong, F Huang, J Li, W Wu… - JCI insight, 2023 - ncbi.nlm.nih.gov
Cardiac fibrosis is associated with an adverse prognosis in cardiovascular disease that
results in a decreased cardiac compliance and, ultimately, heart failure. Recent studies have …

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic Acids Research, 2023 - academic.oup.com
Abstract The 2023 Nucleic Acids Research Database Issue contains 178 papers ranging
across biology and related fields. There are 90 papers reporting on new databases and 82 …

Gastrulation-stage gene expression in Nipbl+/− mouse embryos foreshadows the development of syndromic birth defects

S Chea, J Kreger, ME Lopez-Burks, AL MacLean… - Science …, 2024 - science.org
In animal models, Nipbl deficiency phenocopies gene expression changes and birth defects
seen in Cornelia de Lange syndrome, the most common cause of which is Nipbl …

scGRN: a comprehensive single-cell gene regulatory network platform of human and mouse

X Huang, C Song, G Zhang, Y Li, Y Zhao… - Nucleic Acids …, 2024 - academic.oup.com
Gene regulatory networks (GRNs) are interpretable graph models encompassing the
regulatory interactions between transcription factors (TFs) and their downstream target …

[HTML][HTML] Deletions of singular U1 snRNA gene significantly interfere with transcription and 3'-end mRNA formation

M Wang, AM Liang, ZZ Zhou, TL Pang, YJ Fan… - PLoS …, 2023 - journals.plos.org
Small nuclear RNAs (snRNAs) are structural and functional cores of the spliceosome. In
metazoan genomes, each snRNA has multiple copies/variants, up to hundreds in mammals …

The chromatin accessibility dynamics during cell fate specifications in zebrafish early embryogenesis

Q Xu, Y Zhang, W Xu, D Liu, W Jin… - Nucleic Acids …, 2024 - academic.oup.com
Chromatin accessibility plays a critical role in the regulation of cell fate decisions. Although
gene expression changes have been extensively profiled at the single-cell level during early …

[HTML][HTML] Temporally specific gene expression and chromatin remodeling programs regulate a conserved Pdyn enhancer

RA Phillips, E Wan, JJ Tuscher, D Reid, OR Drake… - Elife, 2023 - elifesciences.org
Neuronal and behavioral adaptations to novel stimuli are regulated by temporally dynamic
waves of transcriptional activity, which shape neuronal function and guide enduring …

[HTML][HTML] Bioinformatics tools and resources for cancer and application

J Huang, L Mao, Q Lei, AY Guo - Chinese Medical Journal, 2024 - journals.lww.com
Tumor bioinformatics plays an important role in cancer research and precision medicine.
The primary focus of traditional cancer research has been molecular and clinical studies of a …