The Known Unknowns of the Immune Response to Coccidioides

RA Ward, GR Thompson 3rd, AC Villani, B Li… - Journal of Fungi, 2021 - mdpi.com
Coccidioidomycosis, otherwise known as Valley Fever, is caused by the dimorphic fungi
Coccidioides immitis and C. posadasii. While most clinical cases present with self-limiting …

Bridging the Gap Between Innate and Adaptive Immunity in the Lung: Summary of the Aspen Lung Conference 2022

A Ray, SL Kale, RP Ramonell - American Journal of Respiratory Cell …, 2023 - atsjournals.org
Although significant strides have been made in the understanding of pulmonary
immunology, much work remains to be done to comprehensively explain coordinated …

Diagnostic classification of interstitial lung disease in clinical practice

A Adegunsoye, CJ Ryerson - Clinics in Chest Medicine, 2021 - chestmed.theclinics.com
Background Interstitial lung disease (ILD) includes many rare and often poorly understood
heterogeneous diseases that cause fibrosis and/or inflammation of the lungs. ILDs are …

Specific splice junction detection in single cells with SICILIAN

R Dehghannasiri, JE Olivieri, A Damljanovic… - Genome Biology, 2021 - Springer
Precise splice junction calls are currently unavailable in scRNA-seq pipelines such as the
10x Chromium platform but are critical for understanding single-cell biology. Here, we …

Advanced single-cell technologies to guide the development of bioengineered lungs

H Wanczyk, T Jensen, DJ Weiss… - American Journal of …, 2021 - journals.physiology.org
Lung transplantation remains the only viable option for individuals suffering from end-stage
lung failure. However, a number of current limitations exist including a continuing shortage …

Sonic hedgehog signalling as a potential endobronchial biomarker in COPD

J Ancel, R Belgacemi, JM Perotin, Z Diabasana… - Respiratory …, 2020 - Springer
Background The hedgehog (HH) pathway has been associated with chronic obstructive
pulmonary disease (COPD) in genome-wide association studies and recent studies suggest …

Towards an artificial human lung: modelling organ-like complexity to aid mechanistic understanding

MV Humbert, CM Spalluto, J Bell… - European …, 2022 - Eur Respiratory Soc
Respiratory diseases account for over 5 million deaths yearly and are a huge burden to
healthcare systems worldwide. Murine models have been of paramount importance to …

Role of pulmonary epithelial arginase‐II in activation of fibroblasts and lung inflammaging

C Zhu, DM Potenza, Y Yang, G Ajalbert, KD Mertz… - Aging cell, 2023 - Wiley Online Library
Elevated arginases including type‐I (Arg‐I) and type‐II isoenzyme (Arg‐II) are reported to
play a role in aging, age‐associated organ inflammaging, and fibrosis. A role of arginase in …

BRAQUE: Bayesian reduction for amplified quantization in UMAP embedding

L Dall'Olio, M Bolognesi, S Borghesi, G Cattoretti… - Entropy, 2023 - mdpi.com
Single-cell biology has revolutionized the way we understand biological processes. In this
paper, we provide a more tailored approach to clustering and analyzing spatial single-cell …

Differential lysotracker uptake defines two populations of distal epithelial cells in idiopathic pulmonary fibrosis

RM Wasnick, I Shalashova, J Wilhelm, A Khadim… - Cells, 2022 - mdpi.com
Idiopathic pulmonary fibrosis (IPF) is a progressive and fatal degenerative lung disease of
unknown etiology. Although in its final stages it implicates, in a reactive manner, all lung cell …