CellCommuNet: an atlas of cell–cell communication networks from single-cell RNA sequencing of human and mouse tissues in normal and disease states

Q Ma, Q Li, X Zheng, J Pan - Nucleic Acids Research, 2024 - academic.oup.com
Cell− cell communication, as a basic feature of multicellular organisms, is crucial for
maintaining the biological functions and microenvironmental homeostasis of cells, organs …

Transcriptional changes of the aging lung

M Jia, PA Agudelo Garcia, JA Ovando‐Ricardez… - Aging cell, 2023 - Wiley Online Library
Aging is a natural process associated with declined organ function and higher susceptibility
to developing chronic diseases. A systemic single‐cell type‐based study provides a unique …

A Year at the Forefront of Proteostasis and Aging

MA Thompson, EA De-Souza - Biology Open, 2023 - journals.biologists.com
During aging, animals experience a decline in proteostasis activity, including loss of stress-
response activation, culminating in the accumulation of misfolded proteins and toxic …

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic Acids Research, 2023 - academic.oup.com
Abstract The 2023 Nucleic Acids Research Database Issue contains 178 papers ranging
across biology and related fields. There are 90 papers reporting on new databases and 82 …

[HTML][HTML] AgeAnnoMO: a knowledgebase of multi-omics annotation for animal aging

K Huang, X Liu, Z Zhang, T Wang, H Xu… - Nucleic Acids …, 2024 - academic.oup.com
Aging entails gradual functional decline influenced by interconnected factors. Multiple
hallmarks proposed as common and conserved underlying denominators of aging on the …

[HTML][HTML] Morroniside Inhibits Inflammatory Bone Loss through the TRAF6-Mediated NF-κB/MAPK Signalling Pathway

J Xiao, Q Han, Z Yu, M Liu, J Sun, M Wu, H Yin, J Fu… - Pharmaceuticals, 2023 - mdpi.com
Osteoporosis is a chronic inflammatory disease that severely affects quality of life. Cornus
officinalis is a Chinese herbal medicine with various bioactive ingredients, among which …

scGRN: a comprehensive single-cell gene regulatory network platform of human and mouse

X Huang, C Song, G Zhang, Y Li, Y Zhao… - Nucleic Acids …, 2024 - academic.oup.com
Gene regulatory networks (GRNs) are interpretable graph models encompassing the
regulatory interactions between transcription factors (TFs) and their downstream target …

scATAC-Ref: a reference of scATAC-seq with known cell labels in multiple species

FC Qian, LW Zhou, YB Zhu, YY Li, ZM Yu… - Nucleic Acids …, 2024 - academic.oup.com
Chromatin accessibility profiles at single cell resolution can reveal cell type-specific
regulatory programs, help dissect highly specialized cell functions and trace cell origin and …

Age-associated DNA methylation changes in Xenopus frogs

M Morselli, R Bennett, NI Shaidani, M Horb… - Epigenetics, 2023 - Taylor & Francis
Age-associated changes in DNA methylation have been characterized across various
animals, but not yet in amphibians, which are of particular interest because they include …

Androgen signaling stabilizes genomes to counteract senescence by promoting XRCC4 transcription

Y Chen, Z Zhen, L Chen, H Wang, X Wang, X Sun… - EMBO …, 2023 - embopress.org
Aging is accompanied by a decreased DNA repair capacity, which might contribute to age‐
associated functional decline in multiple tissues. Disruption in hormone signaling …