The computational capabilities of many-to-many protein interaction networks

HE Klumpe, J Garcia-Ojalvo, MB Elowitz, YE Antebi - Cell Systems, 2023 - cell.com
Many biological circuits comprise sets of protein variants that interact with one another in a
many-to-many, or promiscuous, fashion. These architectures can provide powerful …

Linking signal input, cell state, and spatial context to inflammatory responses

RA Gottschalk, RN Germain - Current Opinion in Immunology, 2024 - Elsevier
Signal integration is central to a causal understanding of appropriately scaled inflammatory
responses. Here, we discuss recent progress in our understanding of the stimulus–response …

Lineage motifs as developmental modules for control of cell type proportions

M Tran, A Askary, MB Elowitz - Developmental Cell, 2024 - cell.com
In multicellular organisms, cell types must be produced and maintained in appropriate
proportions. One way this is achieved is through committed progenitor cells or extrinsic …

[HTML][HTML] Diversity in Notch ligand-receptor signaling interactions

R Kuintzle, LA Santat, MB Elowitz - bioRxiv, 2023 - ncbi.nlm.nih.gov
The Notch signaling pathway uses families of ligands and receptors to transmit signals to
nearby cells. These components are expressed in diverse combinations in different cell …

Modes and motifs in multicellular communication

AC Kögler, P Müller - Cell Systems, 2024 - cell.com
Signaling pathways feature multiple interacting ligand and receptor variants, which are
thought to act in a combinatorial manner to elicit different cellular responses. Transcriptome …

[HTML][HTML] Principles of Computation by Competitive Protein Dimerization Networks

J Parres-Gold, M Levine, B Emert, A Stuart, MB Elowitz - bioRxiv, 2023 - ncbi.nlm.nih.gov
Many biological signaling pathways employ proteins that competitively dimerize in diverse
combinations. These dimerization networks can perform biochemical computations, in which …

Cellular and molecular networks of intercellular signaling in bone marrow hematopoiesis

Z Thomas, B Wang, W Boohar, M Vergel, J Eerdeng… - bioRxiv, 2024 - biorxiv.org
Hematopoietic stem and progenitor cells (HSPCs) rely on intercellular signaling to maintain
and adjust their production of blood and immune cells. This process occurs in the semi …

[HTML][HTML] New aspects of TGF-β superfamily signaling in development and disease (2022 FASEB meeting review)

SJ Newfeld, MB O'Connor - Faculty Reviews, 2022 - ncbi.nlm.nih.gov
Abstract The 13th Federation of American Societies for Experimental Biology (FASEB)
Summer Research Conference,“TGF-β superfamily signaling in development and disease” …