Yolk sac cell atlas reveals multiorgan functions during human early development

I Goh, RA Botting, A Rose, S Webb, J Engelbert… - Science, 2023 - science.org
The extraembryonic yolk sac (YS) ensures delivery of nutritional support and oxygen to the
developing embryo but remains ill-defined in humans. We therefore assembled a …

An atlas of rabbit development as a model for single-cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - Nature Cell …, 2023 - nature.com
Traditionally, the mouse has been the favoured vertebrate model for biomedical research,
due to its experimental and genetic tractability. However, non-rodent embryological studies …

Building and analyzing metacells in single-cell genomics data

M Bilous, L Hérault, AAG Gabriel… - Molecular Systems …, 2024 - embopress.org
The advent of high-throughput single-cell genomics technologies has fundamentally
transformed biological sciences. Currently, millions of cells from complex biological tissues …

Developmental regulation of primitive erythropoiesis

MP Rossmann, J Palis - Current Opinion in Hematology, 2024 - journals.lww.com
The ability to interrogate single cells in vivo continues to yield new insights into the birth of
the first essential organ system of the developing embryo. A comparison of the regulation of …

Rabbit development as a model for single cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - bioRxiv, 2022 - biorxiv.org
Biomedical research relies heavily on the use of model organisms to gain insight into human
health and development. Traditionally, the mouse has been the favored vertebrate model …

Inter-gastruloid heterogeneity revealed by single cell transcriptomics time course: implications for organoid based perturbation studies

LU Rosen, LC Stapel, R Argelaguet, CG Barker… - bioRxiv, 2022 - biorxiv.org
Recent advances in organoid and genome editing technologies are allowing for
perturbation experiments at an unprecedented scale. However, before doing such …

Marsupial single-cell transcriptomics provides an atlas of developmental heterochrony

S Menchero, C Barrington, G Alanis-Lobato, W Varsally… - bioRxiv, 2024 - biorxiv.org
Single-cell transcriptomics has revealed conserved and divergent programmes of
organogenesis in mammals, but existing studies have focused on eutherians. Marsupials …

Bespoke single cell molecular and tissue-scale analysis reveals mechanisms underpinning development and disease in complex developing cell populations

ME Strauss, MLN Ton, S Mason, J Bagri, LTG Harland… - bioRxiv, 2023 - biorxiv.org
Perturbation studies using gene knockouts have become a key tool for understanding the
roles of regulatory genes in development and disease. Here we systematically characterise …

[HTML][HTML] Erythropoiesis in the mammalian embryo

J Palis - Experimental Hematology, 2024 - Elsevier
Red blood cells (RBCs) comprise a critical component of the cardiovascular network, which
constitutes the first functional organ system of the developing mammalian embryo …

[HTML][HTML] Hematopoietic cluster formation: an essential prelude to blood cell genesis

T Yokomizo - Experimental Hematology, 2024 - Elsevier
Adult blood cells are produced in the bone marrow by hematopoietic stem cells (HSCs), the
origin of which can be traced back to fetal developmental stages. Indeed, during mouse …