Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

GS Gulati, JP D'Silva, Y Liu, L Wang… - … Reviews Molecular Cell …, 2024 - nature.com
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …

Artificial Intelligence in battling infectious diseases: A transformative role

C Li, G Ye, Y Jiang, Z Wang, H Yu… - Journal of Medical …, 2024 - Wiley Online Library
It is widely acknowledged that infectious diseases have wrought immense havoc on human
society, being regarded as adversaries from which humanity cannot elude. In recent years …

[HTML][HTML] Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists

A Abedini, A Sánchez-Navaro, J Wu… - The Journal of …, 2024 - Am Soc Clin Investig
Mineralocorticoid excess commonly leads to hypertension (HTN) and kidney disease. In our
study, we used single-cell expression and chromatin accessibility tools to characterize the …

[HTML][HTML] A global view of aging and Alzheimer's pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains

A Sziraki, Z Lu, J Lee, G Banyai, S Anderson… - Nature Genetics, 2023 - nature.com
Conventional methods fall short in unraveling the dynamics of rare cell types related to
aging and diseases. Here we introduce EasySci, an advanced single-cell combinatorial …

[HTML][HTML] Protracted neuronal recruitment in the temporal lobes of young children

MA Nascimento, S Biagiotti, V Herranz-Pérez… - Nature, 2024 - nature.com
The temporal lobe of the human brain contains the entorhinal cortex (EC). This region of the
brain is a highly interconnected integrative hub for sensory and spatial information; it also …

CD200+ fibroblasts form a pro-resolving mesenchymal network in arthritis

S Rauber, H Mohammadian, C Schmidkonz… - Nature …, 2024 - nature.com
Fibroblasts are important regulators of inflammation, but whether fibroblasts change
phenotype during resolution of inflammation is not clear. Here we use positron emission …

Integrating multi-omics data to analyze the potential pathogenic mechanism of CTSH gene involved in type 1 diabetes in the exocrine pancreas

Z Song, S Li, Z Shang, W Lv, X Cheng… - Briefings in …, 2024 - academic.oup.com
Abstract Type 1 diabetes (T1D) is an autoimmune disease caused by the destruction of
insulin-producing pancreatic islet beta cells. Despite significant advancements, the precise …

Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing

CU Yuan, FX Quah, M Hemberg - Molecular Aspects of Medicine, 2024 - Elsevier
Single-cell technologies have transformed biomedical research over the last decade,
opening up new possibilities for understanding cellular heterogeneity, both at the genomic …

[HTML][HTML] Transcriptomic atlas of midbrain dopamine neurons uncovers differential vulnerability in a Parkinsonism lesion model

BY Salmani, L Lahti, L Gillberg, JK Jacobsen, I Mantas… - Elife, 2024 - elifesciences.org
Midbrain dopamine (mDA) neurons comprise diverse cells with unique innervation targets
and functions. This is illustrated by the selective sensitivity of mDA neurons of the substantia …

[HTML][HTML] Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's Disease

E Miyoshi, S Morabito, CM Henningfield… - BioRxiv, 2023 - ncbi.nlm.nih.gov
The pathogenesis of Alzheimer's disease (AD) depends on environmental and heritable
factors, with remarkable differences evident between individuals at the molecular level. Here …