DNA methylation biomarkers: cancer and beyond

T Mikeska, JM Craig - Genes, 2014 - mdpi.com
Biomarkers are naturally-occurring characteristics by which a particular pathological process
or disease can be identified or monitored. They can reflect past environmental exposures …

Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

VK Rakyan, TA Down, S Maslau, T Andrew… - Genome …, 2010 - genome.cshlp.org
There is a growing realization that some aging-associated phenotypes/diseases have an
epigenetic basis. Here, we report the first genome-scale study of epigenomic dynamics …

An epigenetic clock for gestational age at birth based on blood methylation data

AK Knight, JM Craig, C Theda, M Bækvad-Hansen… - Genome biology, 2016 - Springer
Background Gestational age is often used as a proxy for developmental maturity by
clinicians and researchers alike. DNA methylation has previously been shown to be …

Mendelian randomization: new applications in the coming age of hypothesis-free causality

DM Evans, G Davey Smith - Annual review of genomics and …, 2015 - annualreviews.org
Mendelian randomization (MR) is an approach that uses genetic variants associated with a
modifiable exposure or biological intermediate to estimate the causal relationship between …

Quantitative comparison of DNA methylation assays for biomarker development and clinical applications

Nature biotechnology, 2016 - nature.com
DNA methylation patterns are altered in numerous diseases and often correlate with
clinically relevant information such as disease subtypes, prognosis and drug response. With …

DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients

M Volkmar, S Dedeurwaerder, DA Cunha… - The EMBO …, 2012 - embopress.org
In addition to genetic predisposition, environmental and lifestyle factors contribute to the
pathogenesis of type 2 diabetes (T2D). Epigenetic changes may provide the link for …

[HTML][HTML] Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements

E Grundberg, E Meduri, JK Sandling… - The American Journal of …, 2013 - cell.com
Epigenetic modifications such as DNA methylation play a key role in gene regulation and
disease susceptibility. However, little is known about the genome-wide frequency …

Whole-genome fingerprint of the DNA methylome during human B cell differentiation

M Kulis, A Merkel, S Heath, AC Queirós, RP Schuyler… - Nature …, 2015 - nature.com
We analyzed the DNA methylome of ten subpopulations spanning the entire B cell
differentiation program by whole-genome bisulfite sequencing and high-density microarrays …

Cell-type deconvolution from DNA methylation: a review of recent applications

AJ Titus, RM Gallimore, LA Salas… - Human molecular …, 2017 - academic.oup.com
Recent advances in cell-type deconvolution approaches are adding to our understanding of
the biology underlying disease development and progression. DNA methylation (DNAm) …

Methylomic analysis of monozygotic twins discordant for autism spectrum disorder and related behavioural traits

CCY Wong, EL Meaburn, A Ronald, TS Price… - Molecular …, 2014 - nature.com
Autism spectrum disorder (ASD) defines a group of common, complex neurodevelopmental
disorders. Although the aetiology of ASD has a strong genetic component, there is …