Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

H Gu, C Bock, TS Mikkelsen, N Jäger, ZD Smith… - Nature …, 2010 - nature.com
Bisulfite sequencing measures absolute levels of DNA methylation at single-nucleotide
resolution, providing a robust platform for molecular diagnostics. We optimized bisulfite …

Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus

CG Bell, AE Teschendorff, VK Rakyan… - BMC medical …, 2010 - Springer
Background Diabetic nephropathy is a serious complication of diabetes mellitus and is
associated with considerable morbidity and high mortality. There is increasing evidence to …

Patterns of reliability: assessing the reproducibility and integrity of DNA methylation measurement

K Sugden, EJ Hannon, L Arseneault, DW Belsky… - Patterns, 2020 - cell.com
DNA methylation plays an important role in both normal human development and risk of
disease. The most utilized method of assessing DNA methylation uses BeadChips …

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

F Marabita, M Almgren, ME Lindholm, S Ruhrmann… - Epigenetics, 2013 - Taylor & Francis
The proper identification of differentially methylated CpGs is central in most epigenetic
studies. The Illumina HumanMethylation450 BeadChip is widely used to quantify DNA …

Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies

AE Teschendorff, J Zhuang, M Widschwendter - Bioinformatics, 2011 - academic.oup.com
Motivation: A common difficulty in large-scale microarray studies is the presence of
confounding factors, which may significantly skew estimates of statistical significance, cause …

Exploration of liver cancer genomes

T Shibata, H Aburatani - Nature reviews Gastroenterology & hepatology, 2014 - nature.com
Liver cancer is the third leading cause of cancer-related death worldwide. Advances in
sequencing technologies have enabled the examination of liver cancer genomes at high …

DNA methylation: a potential mediator between air pollution and metabolic syndrome

P Poursafa, Z Kamali, E Fraszczyk, HM Boezen… - Clinical …, 2022 - Springer
Given the global increase in air pollution and its crucial role in human health, as well as the
steep rise in prevalence of metabolic syndrome (MetS), a better understanding of the …

Multi-omics analysis defines core genomic alterations in pheochromocytomas and paragangliomas

LJ Castro-Vega, E Letouzé, N Burnichon… - Nature …, 2015 - nature.com
Abstract Pheochromocytomas and paragangliomas (PCCs/PGLs) are neural crest-derived
tumours with a very strong genetic component. Here we report the first integrated genomic …

[HTML][HTML] Vision transformer-based weakly supervised histopathological image analysis of primary brain tumors

Z Li, Y Cong, X Chen, J Qi, J Sun, T Yan, H Yang, J Liu… - IScience, 2023 - cell.com
Diagnosis of primary brain tumors relies heavily on histopathology. Although various
computational pathology methods have been developed for automated diagnosis of primary …

Aging and chronic sun exposure cause distinct epigenetic changes in human skin

E Grönniger, B Weber, O Heil, N Peters, F Stäb… - PLoS …, 2010 - journals.plos.org
Epigenetic changes are widely considered to play an important role in aging, but
experimental evidence to support this hypothesis has been scarce. We have used array …