Site effects how-to and when: An overview of retrospective techniques to accommodate site effects in multi-site neuroimaging analyses

JMM Bayer, PM Thompson, CRK Ching, M Liu… - Frontiers in …, 2022 - frontiersin.org
Site differences, or systematic differences in feature distributions across multiple data-
acquisition sites, are a known source of heterogeneity that may adversely affect large-scale …

Detect and correct bias in multi-site neuroimaging datasets

C Wachinger, A Rieckmann, S Pölsterl… - Medical Image …, 2021 - Elsevier
The desire to train complex machine learning algorithms and to increase the statistical
power in association studies drives neuroimaging research to use ever-larger datasets. The …

Mitigating site effects in covariance for machine learning in neuroimaging data

AA Chen, JC Beer, NJ Tustison, PA Cook… - Human brain …, 2022 - Wiley Online Library
To acquire larger samples for answering complex questions in neuroscience, researchers
have increasingly turned to multi‐site neuroimaging studies. However, these studies are …

Moving beyond processing and analysis-related variation in neuroscience

X Li, NB Esper, L Ai, S Giavasis, H Jin, E Feczko, T Xu… - BioRxiv, 2021 - biorxiv.org
When fields lack consensus standards and ground truths for their analytic methods,
reproducibility can be more of an ideal than a reality. Such has been the case for functional …

[HTML][HTML] A deep learning-based multisite neuroimage harmonization framework established with a traveling-subject dataset

D Tian, Z Zeng, X Sun, Q Tong, H Li, H He, JH Gao… - NeuroImage, 2022 - Elsevier
The accumulation of multisite large-sample MRI datasets collected during large brain
research projects in the last decade has provided critical resources for understanding the …

[HTML][HTML] Accommodating site variation in neuroimaging data using normative and hierarchical Bayesian models

JMM Bayer, R Dinga, SM Kia, AR Kottaram, T Wolfers… - Neuroimage, 2022 - Elsevier
The potential of normative modeling to make individualized predictions from neuroimaging
data has enabled inferences that go beyond the case-control approach. However, site …

[HTML][HTML] Power estimation for non-standardized multisite studies

A Keshavan, F Paul, MK Beyer, AH Zhu, N Papinutto… - NeuroImage, 2016 - Elsevier
A concern for researchers planning multisite studies is that scanner and T1-weighted
sequence-related biases on regional volumes could overshadow true effects, especially for …

Deep learning in large and multi-site structural brain MR imaging datasets

M Bento, I Fantini, J Park, L Rittner… - Frontiers in …, 2022 - frontiersin.org
Large, multi-site, heterogeneous brain imaging datasets are increasingly required for the
training, validation, and testing of advanced deep learning (DL)-based automated tools …

[HTML][HTML] Comparing spatial null models for brain maps

RD Markello, B Misic - NeuroImage, 2021 - Elsevier
Technological and data sharing advances have led to a proliferation of high-resolution
structural and functional maps of the brain. Modern neuroimaging research increasingly …

Machine learning with multi-site imaging data: An empirical study on the impact of scanner effects

B Glocker, R Robinson, DC Castro, Q Dou… - arXiv preprint arXiv …, 2019 - arxiv.org
This is an empirical study to investigate the impact of scanner effects when using machine
learning on multi-site neuroimaging data. We utilize structural T1-weighted brain MRI …