AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations

WK Shen, SY Chen, ZQ Gan, YZ Zhang… - Nucleic acids …, 2023 - academic.oup.com
Transcription factors (TFs) are proteins that interact with specific DNA sequences to regulate
gene expression and play crucial roles in all kinds of biological processes. To keep up with …

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

HM Zhang, T Liu, CJ Liu, S Song, X Zhang… - Nucleic acids …, 2015 - academic.oup.com
Transcription factors (TFs) are key regulators for gene expression. Here we updated the
animal TF database AnimalTFDB to version 2.0 (http://bioinfo. life. hust. edu …

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

H Hu, YR Miao, LH Jia, QY Yu, Q Zhang… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Animal Transcription Factor DataBase (AnimalTFDB) is a resource aimed to
provide the most comprehensive and accurate information for animal transcription factors …

AnimalTFDB: a comprehensive animal transcription factor database

HM Zhang, H Chen, W Liu, H Liu, J Gong… - Nucleic acids …, 2012 - academic.oup.com
Transcription factors (TFs) are proteins that bind to specific DNA sequences, thereby playing
crucial roles in gene-expression regulation through controlling the transcription of genetic …

TFCat: the curated catalog of mouse and human transcription factors

DL Fulton, S Sundararajan, G Badis, TR Hughes… - Genome biology, 2009 - Springer
Unravelling regulatory programs governed by transcription factors (TFs) is fundamental to
understanding biological systems. TFCat is a catalog of mouse and human TFs based on a …

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

A Khan, O Fornes, A Stigliani, M Gheorghe… - Nucleic acids …, 2018 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net) is an open-access database of curated, non-
redundant transcription factor (TF)-binding profiles stored as position frequency matrices …

ITFP: an integrated platform of mammalian transcription factors

G Zheng, K Tu, Q Yang, Y Xiong, C Wei, L Xie… - …, 2008 - academic.oup.com
Investigation of transcription factors (TFs) and their downstream regulated genes (targets) is
a significant issue in post-genome era, which can provide a brand new vision for some vital …

A mouse tissue transcription factor atlas

Q Zhou, M Liu, X Xia, T Gong, J Feng, W Liu… - Nature …, 2017 - nature.com
Transcription factors (TFs) drive various biological processes ranging from embryonic
development to carcinogenesis. Here, we employ a recently developed concatenated …

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

JA Castro-Mondragon, R Riudavets-Puig… - Nucleic acids …, 2022 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net/) is an open-access database containing
manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six …

TFClass: expanding the classification of human transcription factors to their mammalian orthologs

E Wingender, T Schoeps, M Haubrock… - Nucleic acids …, 2018 - academic.oup.com
TFClass is a resource that classifies eukaryotic transcription factors (TFs) according to their
DNA-binding domains (DBDs), available online at http://tfclass. bioinf. med. uni-goettingen …