[HTML][HTML] Breathing fresh air into respiratory research with single-cell RNA sequencing

MJ Alexander, GRS Budinger… - European Respiratory …, 2020 - Eur Respiratory Soc
The complex cellular heterogeneity of the lung poses a unique challenge to researchers in
the field. While the use of bulk RNA sequencing has become a ubiquitous technology in …

Looking at the developing lung in single-cell resolution

I Mižíková, B Thébaud - American Journal of Physiology …, 2021 - journals.physiology.org
Lung development is a complicated and delicate process, facilitated by spatially and
temporarily coordinated cross talk of up to 40 cell types. Developmental origin and …

Transcriptomics and single‐cell RNA‐sequencing

DC Chambers, AM Carew, SW Lukowski… - …, 2019 - Wiley Online Library
The past four decades have yielded advances in molecular biology allowing detailed
characterization of the cellular genome and the transcriptome: the complete set of RNA …

Single-nucleus RNA-sequencing profiling of mouse lung. Reduced dissociation bias and improved rare cell-type detection compared with single-cell RNA sequencing

JR Koenitzer, H Wu, JJ Atkinson, SL Brody… - American journal of …, 2020 - atsjournals.org
Single-cell RNA sequencing (scRNASeq) has advanced our understanding of lung biology,
but its utility is limited by the need for fresh samples, loss of cell types by death or …

Isolation of high-yield and-quality RNA from human precision-cut lung slices for RNA-sequencing and computational integration with larger patient cohorts

J Stegmayr, HN Alsafadi… - … of Physiology-Lung …, 2021 - journals.physiology.org
Precision-cut lung slices (PCLS) have gained increasing interest as a model to study lung
biology/disease and screening novel therapeutics. In particular, PCLS derived from human …

[HTML][HTML] Single-cell RNA sequencing of mouse lower respiratory tract epithelial cells: A meta-analysis

LR Martins, H Glimm, C Scholl - Cells & Development, 2023 - Elsevier
The respiratory system is a vital component of our body, essential for both oxygen uptake
and immune defense. Knowledge of cellular composition and function in different parts of …

Single-cell transcriptomic analysis of human lung reveals complex multicellular changes during pulmonary fibrosis

PA Reyfman, JM Walter, N Joshi, KR Anekalla… - BioRxiv, 2018 - biorxiv.org
Pulmonary fibrosis is a devastating disorder that results in the progressive replacement of
normal lung tissue with fibrotic scar. Available therapies slow disease progression, but most …

A pulmonologist's guide to perform and analyse cross-species single lung cell transcriptomics

P Pennitz, H Kirsten, VD Friedrich… - European …, 2022 - Eur Respiratory Soc
Single-cell ribonucleic acid sequencing is becoming widely employed to study biological
processes at a novel resolution depth. The ability to analyse transcriptomes of multiple …

Dissecting lung development and fibrosis at single-cell resolution

DL Farber, PA Sims - Genome medicine, 2019 - Springer
Editorial summary Single-cell transcriptome profiling has enabled high-resolution analysis of
cellular populations in tissues during development, health, and disease. Recent studies …

Single-cell RNA sequencing of bronchoscopy specimens: development of a rapid minimal handling protocol

FV Gerayeli, S Milne, CX Yang, X Li, E Guinto… - …, 2023 - Taylor & Francis
Single-cell RNA sequencing (scRNA-seq) is an important tool for understanding disease
pathophysiology, including airway diseases. Currently, the majority of scRNA-seq studies in …