Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression

NC Chang, Q Rovira, J Wells, C Feschotte… - Genome …, 2022 - genome.cshlp.org
There is considerable interest in understanding the effect of transposable elements (TEs) on
embryonic development. Studies in humans and mice are limited by the difficulty of working …

Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in …

HJ Lee, Y Hou, JH Maeng, NM Shah, Y Chen… - Genome …, 2022 - genome.cshlp.org
Transposable elements (TEs) encode regulatory elements that impact gene expression in
multiple species, yet a comprehensive analysis of zebrafish TEs in the context of gene …

[PDF][PDF] Vertebrate lineages exhibit diverse patterns of transposable element regulation and expression across tissues

GIM Pasquesi, BW Perry… - Genome Biology and …, 2020 - academic.oup.com
Transposable elements (TEs) comprise a major fraction of vertebrate genomes, yet little is
known about their expression and regulation across tissues, and how this varies across …

Tissue-specific usage of transposable element-derived promoters in mouse development

B Miao, S Fu, C Lyu, P Gontarz, T Wang, B Zhang - Genome biology, 2020 - Springer
Abstract Background Transposable elements (TEs) are a significant component of
eukaryotic genomes and play essential roles in genome evolution. Mounting evidence …

Evolution and diversity of transposable elements in fish genomes

F Shao, M Han, Z Peng - Scientific reports, 2019 - nature.com
Transposable elements (TEs) are genomic sequences that can move, multiply, and often
form sizable fractions of vertebrate genomes. Fish belong to a unique group of vertebrates …

Transposable elements as genetic regulatory substrates in early development

WD Gifford, SL Pfaff, TS Macfarlan - Trends in cell biology, 2013 - cell.com
The abundance and ancient origins of transposable elements (TEs) in eukaryotic genomes
has spawned research into the potential symbiotic relationship between these elements and …

Transposable elements as genetic accelerators of evolution: contribution to genome size, gene regulatory network rewiring and morphological innovation

H Nishihara - Genes & Genetic Systems, 2019 - jstage.jst.go.jp
In the current era, as a growing number of genome sequence assemblies have been
reported in animals, an in-depth analysis of transposable elements (TEs) is one of the most …

Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

IA Warren, M Naville, D Chalopin, P Levin… - Chromosome …, 2015 - Springer
Since their discovery, a growing body of evidence has emerged demonstrating that
transposable elements are important drivers of species diversity. These mobile elements …

Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates

D Chalopin, M Naville, F Plard… - Genome biology and …, 2015 - academic.oup.com
Transposable elements (TEs) are major components of vertebrate genomes, with major
roles in genome architecture and evolution. In order to characterize both common patterns …

Ten things you should know about transposable elements

G Bourque, KH Burns, M Gehring, V Gorbunova… - Genome biology, 2018 - Springer
Transposable elements (TEs) are major components of eukaryotic genomes. However, the
extent of their impact on genome evolution, function, and disease remain a matter of intense …