[HTML][HTML] The promise of explainable deep learning for omics data analysis: Adding new discovery tools to AI

M Santorsola, F Lescai - New Biotechnology, 2023 - Elsevier
Deep learning has already revolutionised the way a wide range of data is processed in
many areas of daily life. The ability to learn abstractions and relationships from …

Explainable machine learning for scientific insights and discoveries

R Roscher, B Bohn, MF Duarte, J Garcke - Ieee Access, 2020 - ieeexplore.ieee.org
Machine learning methods have been remarkably successful for a wide range of application
areas in the extraction of essential information from data. An exciting and relatively recent …

Deep learning in bioinformatics: Introduction, application, and perspective in the big data era

Y Li, C Huang, L Ding, Z Li, Y Pan, X Gao - Methods, 2019 - Elsevier
Deep learning, which is especially formidable in handling big data, has achieved great
success in various fields, including bioinformatics. With the advances of the big data era in …

Explainable artificial intelligence for omics data: a systematic mapping study

PA Toussaint, F Leiser, S Thiebes… - Briefings in …, 2024 - academic.oup.com
Researchers increasingly turn to explainable artificial intelligence (XAI) to analyze omics
data and gain insights into the underlying biological processes. Yet, given the …

Obtaining genetics insights from deep learning via explainable artificial intelligence

G Novakovsky, N Dexter, MW Libbrecht… - Nature Reviews …, 2023 - nature.com
Artificial intelligence (AI) models based on deep learning now represent the state of the art
for making functional predictions in genomics research. However, the underlying basis on …

Towards explainable artificial intelligence

W Samek, KR Müller - … AI: interpreting, explaining and visualizing deep …, 2019 - Springer
In recent years, machine learning (ML) has become a key enabling technology for the
sciences and industry. Especially through improvements in methodology, the availability of …

Xai meets biology: A comprehensive review of explainable ai in bioinformatics applications

Z Zhou, M Hu, M Salcedo, N Gravel, W Yeung… - arXiv preprint arXiv …, 2023 - arxiv.org
Artificial intelligence (AI), particularly machine learning and deep learning models, has
significantly impacted bioinformatics research by offering powerful tools for analyzing …

Explainable ai for bioinformatics: Methods, tools and applications

MR Karim, T Islam, M Shajalal, O Beyan… - Briefings in …, 2023 - academic.oup.com
Artificial intelligence (AI) systems utilizing deep neural networks and machine learning (ML)
algorithms are widely used for solving critical problems in bioinformatics, biomedical …

Machine learning and deep analytics for biocomputing: call for better explainability

D Petkovic, L Kobzik, C Re - PACIFIC SYMPOSIUM ON …, 2018 - World Scientific
The goals of this workshop are to discuss challenges in explainability of current Machine
Leaning and Deep Analytics (MLDA) used in biocomputing and to start the discussion on …

Validity of machine learning in biology and medicine increased through collaborations across fields of expertise

M Littmann, K Selig, L Cohen-Lavi, Y Frank… - Nature Machine …, 2020 - nature.com
Abstract Machine learning (ML) has become an essential asset for the life sciences and
medicine. We selected 250 articles describing ML applications from 17 journals sampling 26 …