Alternative animal models of aging research

S Holtze, E Gorshkova, S Braude… - Frontiers in Molecular …, 2021 - frontiersin.org
Most research on mechanisms of aging is being conducted in a very limited number of
classical model species, ie, laboratory mouse (Mus musculus), rat (Rattus norvegicus …

Model systems for regeneration: salamanders

A Joven, A Elewa, A Simon - Development, 2019 - journals.biologists.com
Salamanders have been hailed as champions of regeneration, exhibiting a remarkable
ability to regrow tissues, organs and even whole body parts, eg their limbs. As such …

Benchmarking of long-read correction methods

JC Dohm, P Peters, N Stralis-Pavese… - NAR Genomics and …, 2020 - academic.oup.com
Third-generation sequencing technologies provided by Pacific Biosciences and Oxford
Nanopore Technologies generate read lengths in the scale of kilobasepairs. However, these …

Species delimitation in herpetology

DM Hillis - Journal of Herpetology, 2019 - meridian.allenpress.com
The discovery and delimitation of species has changed dramatically over time. Species
delimitation practices became more thorough and formal in the 1900s with the introduction …

The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms

MA Grohme, S Schloissnig, A Rozanski, M Pippel… - Nature, 2018 - nature.com
The planarian Schmidtea mediterranea is an important model for stem cell research and
regeneration, but adequate genome resources for this species have been lacking. Here we …

Holo-omics: integrated host-microbiota multi-omics for basic and applied biological research

L Nyholm, A Koziol, S Marcos, AB Botnen, O Aizpurua… - Iscience, 2020 - cell.com
From ontogenesis to homeostasis, the phenotypes of complex organisms are shaped by the
bidirectional interactions between the host organisms and their associated microbiota …

Determinants and consequences of dispersal in vertebrates with complex life cycles: a review of pond-breeding amphibians

H Cayuela, A Valenzuela-Sánchez… - … Quarterly Review of …, 2020 - journals.uchicago.edu
Dispersal is a central process in ecology and evolution. It strongly influences the dynamics
of spatially structured populations and affects evolutionary processes by shaping patterns of …

Take a walk on the KRAB side

O Rosspopoff, D Trono - Trends in Genetics, 2023 - cell.com
Canonical Krüppel-associated box (KRAB)-containing zinc finger proteins (KZFPs) act as
major repressors of transposable elements (TEs) via the KRAB-mediated recruitment of the …

Recompleting the Caenorhabditis elegans genome

J Yoshimura, K Ichikawa, MJ Shoura, KL Artiles… - Genome …, 2019 - genome.cshlp.org
Caenorhabditis elegans was the first multicellular eukaryotic genome sequenced to
apparent completion. Although this assembly employed a standard C. elegans strain (N2), it …

A chromosome-scale assembly of the axolotl genome

JJ Smith, N Timoshevskaya, VA Timoshevskiy… - Genome …, 2019 - genome.cshlp.org
The axolotl (Ambystoma mexicanum) provides critical models for studying regeneration,
evolution, and development. However, its large genome (∼ 32 Gb) presents a formidable …