The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Deciphering the lexicon of protein targets: a review on multifaceted drug discovery in the era of artificial intelligence

S Nandi, S Bhaduri, D Das, P Ghosh… - Molecular …, 2024 - ACS Publications
Understanding protein sequence and structure is essential for understanding protein–
protein interactions (PPIs), which are essential for many biological processes and diseases …

Application of artificial intelligence in drug design: A review

S Singh, N Kaur, A Gehlot - Computers in Biology and Medicine, 2024 - Elsevier
Artificial intelligence (AI) is a field of computer science that involves acquiring information,
developing rule bases, and mimicking human behaviour. The fundamental concept behind …

DrugRepoBank: a comprehensive database and discovery platform for accelerating drug repositioning

Y Huang, D Dong, W Zhang, R Wang, YCD Lin… - Database, 2024 - academic.oup.com
In recent years, drug repositioning has emerged as a promising alternative to the time-
consuming, expensive and risky process of developing new drugs for diseases. However …

[HTML][HTML] Genomic alterations in oral multiple primary cancers

X Zhou, X Cai, F Jing, X Li, J Zhang… - International Journal of …, 2024 - nature.com
Oral squamous cell carcinoma (OSCC) is the predominant type of oral cancer, while some
patients may develop oral multiple primary cancers (MPCs) with unclear etiology. This study …

Unlocking the therapeutic potential of drug combinations through synergy prediction using graph transformer networks

W Alam, H Tayara, KT Chong - Computers in Biology and Medicine, 2024 - Elsevier
Drug combinations are frequently used to treat cancer to reduce side effects and increase
efficacy. The experimental discovery of drug combination synergy is time-consuming and …

Benchmarking reverse docking through AlphaFold2 human proteome

Q Luo, S Wang, HY Li, L Zheng, Y Mu, J Guo - Protein Science, 2024 - Wiley Online Library
Predicting the binding of ligands to the human proteome via reverse‐docking methods
enables the understanding of ligand's interactions with potential protein targets in the human …

PT-Finder: A multi-modal neural network approach to target identification

H Nada, S Kim, K Lee - Computers in Biology and Medicine, 2024 - Elsevier
Efficient target identification for bioactive compounds, including novel synthetic analogs, is
crucial for accelerating the drug discovery pipeline. However, the process of target …

GK BertDTA: a graph representation learning and semantic embedding-based framework for drug-target affinity prediction

X Qiu, H Wang, X Tan, Z Fang - Computers in Biology and Medicine, 2024 - Elsevier
Developing new drugs is costly, time-consuming, and risky. Drug-target affinity (DTA),
indicating the binding capability between drugs and target proteins, is a crucial indicator for …

Identification of MACC1 as a potential biomarker for pulmonary arterial hypertension based on bioinformatics and machine learning

X Zhou, B Liang, W Lin, L Zha - Computers in Biology and Medicine, 2024 - Elsevier
Background Pulmonary arterial hypertension (PAH) is a life-threatening disease
characterized by abnormal early activation of pulmonary arterial smooth muscle cells …