The organization of the bacterial genome

EPC Rocha - Annual review of genetics, 2008 - annualreviews.org
Many bacterial cellular processes interact intimately with the chromosome. Such interplay is
the major driving force of genome structure or organization. Interactions take place at …

The relative value of operon predictions

RWW Brouwer, OP Kuipers… - Briefings in …, 2008 - academic.oup.com
For most organisms, computational operon predictions are the only source of genome-wide
operon information. Operon prediction methods described in literature are based on (a …

Transcript analysis of the Halothiobacillus neapolitanus cso operon

F Cai, S Heinhorst, JM Shively, GC Cannon - Archives of microbiology, 2008 - Springer
Carboxysomes are polyhedral microcompartments that sequester the CO 2-fixing enzyme
ribulose 1, 5-bisphosphate carboxylase/oxygenase in many autotrophic bacteria. Their …

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts

K Choi, S Kim - BMC bioinformatics, 2008 - Springer
Background Once a new genome is sequenced, one of the important questions is to
determine the presence and absence of biological pathways. Analysis of biological …

Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes

M Brilli, R Fani, P Liò - Briefings in bioinformatics, 2008 - academic.oup.com
The study of metabolic pathways is becoming increasingly important to exploit an integrated,
systems-level approach for optimizing a desired cellular property or phenotype. In this …

Systems analysis of complex biological data for bioprocess enhancement.

SP Charaniya - 2008 - conservancy.umn.edu
Recent advances in data-driven knowledge discovery approaches, such asomics'
technologies, provide enormous opportunities to uncover the multifarious determinants of …

1. Overview and Scientific Context

K ARIMA, J WOOLEY - Computational Methods for …, 2008 - books.google.com
This is an extraordinary time for biology; among other transformations, all fields of biology
are becoming data rich. Most notably, the volume of genomic data in public repositories for …

[PDF][PDF] The entire organization of operons on the Bacillus subtilis genome

H Kobayashi - 2008 - naist.repo.nii.ac.jp
In the post-genomic era, comprehension of cellular processes and systems requires global
and non-targeted approaches to handle vast amounts of biological information. The present …

Hipótese evolutiva sobre a assimilição de compostos nitrogenados por metazoários: a limitação α-aminoácidos

E Montagna - 2008 - teses.usp.br
Os modelos de evolução de vias metabólicas estão baseados em técnicas moleculares e
bioinformática e nem sempre levam em consideração o contextos fisiológico e ecológico do …

[PDF][PDF] Computational methods for deciphering genomic structures in prokaryotes

D Che - 2008 - getd.libs.uga.edu
High-throughput sequencing technologies have generated huge amounts of genomic data.
This wealth of genomic data provides computational biologists unprecedented opportunities …