Human nutrition, the gut microbiome and the immune system

AL Kau, PP Ahern, NW Griffin, AL Goodman, JI Gordon - Nature, 2011 - nature.com
Marked changes in socio-economic status, cultural traditions, population growth and
agriculture are affecting diets worldwide. Understanding how our diet and nutritional status …

Genetics and pathogenesis of inflammatory bowel disease

B Khor, A Gardet, RJ Xavier - Nature, 2011 - nature.com
Recent advances have provided substantial insight into the maintenance of mucosal
immunity and the pathogenesis of inflammatory bowel disease. Cellular programs …

Interactive metagenomic visualization in a Web browser

BD Ondov, NH Bergman, AM Phillippy - BMC bioinformatics, 2011 - Springer
Background A critical output of metagenomic studies is the estimation of abundances of
taxonomical or functional groups. The inherent uncertainty in assignments to these groups …

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

PD Schloss, D Gevers, SL Westcott - PloS one, 2011 - journals.plos.org
The advent of next generation sequencing has coincided with a growth in interest in using
these approaches to better understand the role of the structure and function of the microbial …

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

R Mendes, M Kruijt, I De Bruijn, E Dekkers… - Science, 2011 - science.org
Disease-suppressive soils are exceptional ecosystems in which crop plants suffer less from
specific soil-borne pathogens than expected owing to the activities of other soil …

Enterotypes of the human gut microbiome

M Arumugam, J Raes, E Pelletier, D Le Paslier… - nature, 2011 - nature.com
Our knowledge of species and functional composition of the human gut microbiome is
rapidly increasing, but it is still based on very few cohorts and little is known about variation …

[HTML][HTML] NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis

E Elinav, T Strowig, AL Kau, J Henao-Mejia, CA Thaiss… - Cell, 2011 - cell.com
Inflammasomes are multiprotein complexes that function as sensors of endogenous or
exogenous damage-associated molecular patterns. Here, we show that deficiency of NLRP6 …

[HTML][HTML] Brain–gut–microbe communication in health and disease

S Grenham, G Clarke, JF Cryan, TG Dinan - Frontiers in physiology, 2011 - frontiersin.org
Bidirectional signalling between the gastrointestinal tract and the brain is regulated at
neural, hormonal, and immunological levels. This construct is known as the brain–gut axis …

Unravelling the effects of the environment and host genotype on the gut microbiome

A Spor, O Koren, R Ley - Nature Reviews Microbiology, 2011 - nature.com
To what extent do host genetics control the composition of the gut microbiome? Studies
comparing the gut microbiota in human twins and across inbred mouse lines have yielded …

Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice

A Everard, V Lazarevic, M Derrien, M Girard… - …, 2011 - Am Diabetes Assoc
OBJECTIVE To investigate deep and comprehensive analysis of gut microbial communities
and biological parameters after prebiotic administration in obese and diabetic mice …