From hormones to secondary metabolism: the emergence of metabolic gene clusters in plants

HY Chu, E Wegel, A Osbourn - The Plant Journal, 2011 - Wiley Online Library
Gene clusters for the synthesis of secondary metabolites are a common feature of microbial
genomes. Well‐known examples include clusters for the synthesis of antibiotics in …

Mechanisms for obnoxious facility game on a path

Y Cheng, W Yu, G Zhang - International conference on combinatorial …, 2011 - Springer
We consider a new facility game, namely, an obnoxious facility game where the facility is
undesirable and all agents try to be as far away from the facility as possible. The social cost …

Algorithmic aspects of heterogeneous biological networks comparison

G Blin, G Fertin, H Mohamed-Babou, I Rusu… - … and Applications: 5th …, 2011 - Springer
Biological networks are commonly used to model molecular activity within the cell. Recent
experimental studies have shown that the detection of conserved subnetworks across …

Integrated analysis of the gene neighbouring impact on bacterial metabolic networks

P Bordron, D Eveillard, I Rusu - IET systems biology, 2011 - IET
Different levels of abstraction are needed to represent a living system. Unfortunately
information of different nature is not superposable in an obvious way, but requires a …

SIPPER: a flexible method to integrate heterogeneous data into a metabolic network

P Bordron, D Eveillard, I Rusu - 2011 IEEE 1st International …, 2011 - ieeexplore.ieee.org
With the accumulation of availableomics' data, developing automatic methods for integrating
and analyzing them into a common context has become a key goal in bioinformatics. In this …

Transcript analysis of the extended hyp-operon in the cyanobacteria Nostoc sp. strain PCC 7120 and Nostoc punctiforme ATCC 29133

M Holmqvist, P Lindberg, Å Agervald, K Stensjö… - BMC Research …, 2011 - Springer
Abstract Background Cyanobacteria harbor two [NiFe]-type hydrogenases consisting of a
large and a small subunit, the Hup-and Hox-hydrogenase, respectively. Insertion of ligands …

Komparative Genomanalyse zur Stammoptimierung produktionsnaher Bacillus-Stämme

A Wollherr - 2011 - ediss.uni-goettingen.de
B. licheniformis DSM13 ist ein gram+, ubiquitär vorkommendes, sporenbildendes Bakterium,
das in großem Maßstab für die industrielle Produktion von Exoenzymen eingesetzt wird, weil …

[PDF][PDF] Integrated analysis of the gene neighbouring impact on bacterial metabolic networks

PBDEI Rusu - researchgate.net
Q1 Different levels of abstraction are needed to represent a living system. Unfortunately
information of different nature is not superposable in an obvious way, but requires a …

[PDF][PDF] Serge SMIDTAS

F KEPES, CDV SCHACHTER, CDJP MAZAT - 2011 - Citeseer
[tel-00607179, v1] Modélisation et analyse, globale et locale, de réseaux d'interactions
biologiques hétérogènes (RIBH) Page 1 2007EVRY0024 Modélisation et analyse, globale et …

Approaches and Methods for Operon Prediction based on Machine Learning Techniques

Y Wang, Y Zhou, C Zhou, S Wang, W Du… - Algorithms in …, 2011 - Wiley Online Library
The concept of operon appeared for the first time in the theory about a protein regulatory
mechanism proposed by Jacob and Monod. An operon represents a basic transcriptional …