[HTML][HTML] Phylogenetic and epidemic modeling of rapidly evolving infectious diseases
Epidemic modeling of infectious diseases has a long history in both theoretical and
empirical research. However the recent explosion of genetic data has revealed the rapid …
empirical research. However the recent explosion of genetic data has revealed the rapid …
Transmission network parameters estimated from HIV sequences for a nationwide epidemic
Background. Many studies of sexual behavior have shown that individuals vary greatly in
their number of sexual partners over time, but it has proved difficult to obtain parameter …
their number of sexual partners over time, but it has proved difficult to obtain parameter …
A novel methodology for large-scale phylogeny partition
Understanding the determinants of virus transmission is a fundamental step for effective
design of screening and intervention strategies to control viral epidemics. Phylogenetic …
design of screening and intervention strategies to control viral epidemics. Phylogenetic …
Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec
Phylodynamic analysis and epidemiologic data identified 3 patterns of spread of primary
human immunodeficiency virus type 1 infection (PHI) among men who have sex with men …
human immunodeficiency virus type 1 infection (PHI) among men who have sex with men …
Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes
JT Herbeck, M Rolland, Y Liu, S McLaughlin… - Journal of …, 2011 - Am Soc Microbiol
ABSTRACT HIV-1 transmission and viral evolution in the first year of infection were studied
in 11 individuals representing four transmitter-recipient pairs and three independent …
in 11 individuals representing four transmitter-recipient pairs and three independent …
The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland
Background. By analyzing human immunodeficiency virus type 1 (HIV-1) pol sequences
from the Swiss HIV Cohort Study (SHCS), we explored whether the prevalence of non-B …
from the Swiss HIV Cohort Study (SHCS), we explored whether the prevalence of non-B …
Genotypic resistance testing in routine clinical care
DT Dunn, K Coughlin, PA Cane - Current Opinion in HIV and AIDS, 2011 - journals.lww.com
Genotypic resistance testing in routine clinical care : Current Opinion in HIV and AIDS
Genotypic resistance testing in routine clinical care : Current Opinion in HIV and AIDS Log in …
Genotypic resistance testing in routine clinical care : Current Opinion in HIV and AIDS Log in …
Concurrency revisited: increasing and compelling epidemiological evidence
TL Mah, JD Shelton - Journal of the International AIDS Society, 2011 - Springer
Multiple sexual partnerships must necessarily lie at the root of a sexually transmitted
epidemic. However, that overlapping or concurrent partnerships have played a pivotal role …
epidemic. However, that overlapping or concurrent partnerships have played a pivotal role …
Dynamics of two separate but linked HIV-1 CRF01_AE outbreaks among injection drug users in Stockholm, Sweden, and Helsinki, Finland
H Skar, M Axelsson, I Berggren, A Thalme… - Journal of …, 2011 - Am Soc Microbiol
Detailed phylogenetic analyses were performed to characterize an HIV-1 outbreak among
injection drug users (IDUs) in Stockholm, Sweden, in 2006. This study investigated the …
injection drug users (IDUs) in Stockholm, Sweden, in 2006. This study investigated the …
Using HIV transmission networks to investigate community effects in HIV prevention trials
Effective population screening of HIV and prevention of HIV transmission are only part of the
global fight against AIDS. Community-level effects, for example those aimed at thwarting …
global fight against AIDS. Community-level effects, for example those aimed at thwarting …