A symbiotic view of life: we have never been individuals

SF Gilbert, J Sapp, AI Tauber - The Quarterly review of …, 2012 - journals.uchicago.edu
The notion of the “biological individual” is crucial to studies of genetics, immunology,
evolution, development, anatomy, and physiology. Each of these biological subdisciplines …

The hallmarks of cancer: a long non-coding RNA point of view

T Gutschner, S Diederichs - RNA biology, 2012 - Taylor & Francis
With the advent of next generation sequencing methods and progress in transcriptome
analysis, it became obvious that the human genome contains much more than just protein …

Genome regulation by long noncoding RNAs

JL Rinn, HY Chang - Annual review of biochemistry, 2012 - annualreviews.org
The central dogma of gene expression is that DNA is transcribed into messenger RNAs,
which in turn serve as the template for protein synthesis. The discovery of extensive …

Scientific utopia: II. Restructuring incentives and practices to promote truth over publishability

BA Nosek, JR Spies, M Motyl - … on Psychological Science, 2012 - journals.sagepub.com
An academic scientist's professional success depends on publishing. Publishing norms
emphasize novel, positive results. As such, disciplinary incentives encourage design …

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

LD Ward, M Kellis - Nucleic acids research, 2012 - academic.oup.com
The resolution of genome-wide association studies (GWAS) is limited by the linkage
disequilibrium (LD) structure of the population being studied. Selecting the most likely …

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

AC English, S Richards, Y Han, M Wang, V Vee, J Qu… - PloS one, 2012 - journals.plos.org
Many genomes have been sequenced to high-quality draft status using Sanger capillary
electrophoresis and/or newer short-read sequence data and whole genome assembly …

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system

SM Sunkin, L Ng, C Lau, T Dolbeare… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Allen Brain Atlas (http://www. brain-map. org) provides a unique online public
resource integrating extensive gene expression data, connectivity data and …

Chapter 12: Human microbiome analysis

XC Morgan, C Huttenhower - PLoS computational biology, 2012 - journals.plos.org
Humans are essentially sterile during gestation, but during and after birth, every body
surface, including the skin, mouth, and gut, becomes host to an enormous variety of …

A beginner's guide to eukaryotic genome annotation

M Yandell, D Ence - Nature Reviews Genetics, 2012 - nature.com
The falling cost of genome sequencing is having a marked impact on the research
community with respect to which genomes are sequenced and how and where they are …

The structural biology of HIV-1: mechanistic and therapeutic insights

A Engelman, P Cherepanov - Nature Reviews Microbiology, 2012 - nature.com
Three-dimensional molecular structures can provide detailed information on biological
mechanisms and, for cases in which the molecular function affects human health, can …