Evolution and biogeography of gymnosperms

XQ Wang, JH Ran - Molecular phylogenetics and evolution, 2014 - Elsevier
Living gymnosperms comprise only a little more than 1000 species, but represent four of the
five main lineages of seed plants, including cycads, ginkgos, gnetophytes and conifers. This …

[HTML][HTML] Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria

JM Padial, T Grant, DR Frost - Zootaxa, 2014 - biotaxa.org
Brachycephaloidea is a monophyletic group of frogs with more than 1000 species
distributed throughout the New World tropics, subtropics, and Andean regions. Recently, the …

Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution

KJ Mitchell, B Llamas, J Soubrier, NJ Rawlence… - Science, 2014 - science.org
The evolution of the ratite birds has been widely attributed to vicariant speciation, driven by
the Cretaceous breakup of the supercontinent Gondwana. The early isolation of Africa and …

Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies

Z Xi, L Liu, JS Rest, CC Davis - Systematic biology, 2014 - academic.oup.com
The molecular era has fundamentally reshaped our knowledge of the evolution and
diversification of angiosperms. One outstanding question is the phylogenetic placement of …

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates

S Duchêne, EC Holmes… - Proceedings of the …, 2014 - royalsocietypublishing.org
Time-scales of viral evolution and emergence have been studied widely, but are often poorly
understood. Molecular analyses of viral evolutionary time-scales generally rely on estimates …

Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias

Y Liu, CJ Cox, W Wang, B Goffinet - Systematic Biology, 2014 - academic.oup.com
Phylogenetic analyses using concatenation of genomic-scale data have been seen as the
panacea for resolving the incongruences among inferences from few or single genes …

BaCoCa–A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

P Kück, TH Struck - Molecular phylogenetics and evolution, 2014 - Elsevier
Abstract BaCoCa (BAse COmposition CAlculator) is a user-friendly software that combines
multiple statistical approaches (like RCFV and C value calculations) to identify biases in …

TreSpEx–-detection of misleading signal in phylogenetic reconstructions based on tree information

TH Struck - Evolutionary Bioinformatics, 2014 - journals.sagepub.com
Phylogenies of species or genes are commonplace nowadays in many areas of comparative
biological studies. However, for phylogenetic reconstructions one must refer to artificial …

[HTML][HTML] Molecular phylogeny and biogeographic history of the armored Neotropical catfish subfamilies Hypoptopomatinae, Neoplecostominae and Otothyrinae …

FF Roxo, JS Albert, GSC Silva, CH Zawadzki… - PLoS …, 2014 - journals.plos.org
The main objectives of this study are estimate a species-dense, time-calibrated molecular
phylogeny of Hypoptopomatinae, Neoplecostominae, and Otothyrinae, which together …

Genomic support for a moa–tinamou clade and adaptive morphological convergence in flightless ratites

AJ Baker, O Haddrath, JD McPherson… - Molecular Biology and …, 2014 - academic.oup.com
One of the most startling discoveries in avian molecular phylogenetics is that the volant
tinamous are embedded in the flightless ratites, but this topology remains controversial …