Single-cell RNA-seq: advances and future challenges

AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …

Zygotic genome activation during the maternal-to-zygotic transition

MT Lee, AR Bonneau, AJ Giraldez - Annual review of cell and …, 2014 - annualreviews.org
Embryogenesis depends on a highly coordinated cascade of genetically encoded events. In
animals, maternal factors contributed by the egg cytoplasm initially control development …

[HTML][HTML] Single cell genomics: advances and future perspectives

IC Macaulay, T Voet - PLoS genetics, 2014 - journals.plos.org
Advances in whole-genome and whole-transcriptome amplification have permitted the
sequencing of the minute amounts of DNA and RNA present in a single cell, offering a …

[PDF][PDF] Defining midbrain dopaminergic neuron diversity by single-cell gene expression profiling

JF Poulin, J Zou, J Drouin-Ouellet, KYA Kim, F Cicchetti… - Cell reports, 2014 - cell.com
Effective approaches to neuropsychiatric disorders require detailed understanding of the
cellular composition and circuitry of the complex mammalian brain. Here, we present a …

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing

FH Biase, X Cao, S Zhong - Genome research, 2014 - genome.cshlp.org
It remains an open question when and how the first cell fate decision is made in mammals.
Using deep single-cell RNA-seq of matched sister blastomeres, we report highly …

Fine mapping of genome activation in bovine embryos by RNA sequencing

A Graf, S Krebs, V Zakhartchenko… - Proceedings of the …, 2014 - National Acad Sciences
During maternal-to-embryonic transition control of embryonic development gradually
switches from maternal RNAs and proteins stored in the oocyte to gene products generated …

Role of Tet proteins in enhancer activity and telomere elongation

F Lu, Y Liu, L Jiang, S Yamaguchi… - Genes & …, 2014 - genesdev.cshlp.org
DNA methylation at the C-5 position of cytosine (5mC) is one of the best-studied epigenetic
modifications and plays important roles in diverse biological processes. Iterative oxidation of …

Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape

E Marco, RL Karp, G Guo, P Robson… - Proceedings of the …, 2014 - National Acad Sciences
We present single-cell clustering using bifurcation analysis (SCUBA), a novel computational
method for extracting lineage relationships from single-cell gene expression data and …

[HTML][HTML] Genome-wide analysis of DNA methylation dynamics during early human development

H Okae, H Chiba, H Hiura, H Hamada, A Sato… - PLoS …, 2014 - journals.plos.org
DNA methylation is globally reprogrammed during mammalian preimplantation
development, which is critical for normal development. Recent reduced representation …

Chromatin dynamics in the regulation of cell fate allocation during early embryogenesis

A Burton, ME Torres-Padilla - Nature reviews Molecular cell biology, 2014 - nature.com
Following fertilization, gametes undergo epigenetic reprogramming in order to revert to a
totipotent state. How embryonic cells subsequently acquire their fate and the role of …