Transcriptional landscape of the prenatal human brain

JA Miller, SL Ding, SM Sunkin, KA Smith, L Ng… - Nature, 2014 - nature.com
The anatomical and functional architecture of the human brain is mainly determined by
prenatal transcriptional processes. We describe an anatomically comprehensive atlas of the …

mTORC1 controls the adaptive transition of quiescent stem cells from G0 to GAlert

JT Rodgers, KY King, JO Brett, MJ Cromie… - Nature, 2014 - nature.com
A unique property of many adult stem cells is their ability to exist in a non-cycling, quiescent
state. Although quiescence serves an essential role in preserving stem cell function until the …

[HTML][HTML] Aerobic glycolysis in the human brain is associated with development and neotenous gene expression

MS Goyal, M Hawrylycz, JA Miller, AZ Snyder… - Cell metabolism, 2014 - cell.com
Aerobic glycolysis (AG; ie, nonoxidative metabolism of glucose despite the presence of
abundant oxygen) accounts for 10%–12% of glucose used by the adult human brain. AG …

Sex differences in the human peripheral blood transcriptome

R Jansen, S Batista, AI Brooks, JA Tischfield… - BMC genomics, 2014 - Springer
Background Genomes of men and women differ in only a limited number of genes located
on the sex chromosomes, whereas the transcriptome is far more sex-specific. Identification …

Cross-study validation for the assessment of prediction algorithms

C Bernau, M Riester, AL Boulesteix, G Parmigiani… - …, 2014 - academic.oup.com
Motivation: Numerous competing algorithms for prediction in high-dimensional settings have
been developed in the statistical and machine-learning literature. Learning algorithms and …

Demyelination during multiple sclerosis is associated with combined activation of microglia/macrophages by IFN-γ and alpha B-crystallin

M Bsibsi, LAN Peferoen, IR Holtman, PJ Nacken… - Acta …, 2014 - Springer
Activated microglia and macrophages play a key role in driving demyelination during
multiple sclerosis (MS), but the factors responsible for their activation remain poorly …

A common gene expression signature in Huntington's disease patient brain regions

A Neueder, GP Bates - BMC medical genomics, 2014 - Springer
Background Gene expression data provide invaluable insights into disease mechanisms. In
Huntington's disease (HD), a neurodegenerative disease caused by a tri-nucleotide repeat …

Differential induction of TLR3-dependent innate immune signaling by closely related parasite species

DP Beiting, L Peixoto, NS Akopyants, SM Beverley… - PloS one, 2014 - journals.plos.org
The closely related protozoan parasites Toxoplasma gondii and Neospora caninum display
similar life cycles, subcellular ultrastructure, invasion mechanisms, metabolic pathways, and …

Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies

E Perez-Palma, BI Bustos, CF Villaman, MA Alarcon… - PloS one, 2014 - journals.plos.org
Genome-wide association studies (GWAS) have successfully identified several risk loci for
Alzheimer's disease (AD). Nonetheless, these loci do not explain the entire susceptibility of …

Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq

JA Miller, V Menon, J Goldy, A Kaykas, CK Lee… - BMC genomics, 2014 - Springer
Background High-throughput sequencing is gradually replacing microarrays as the
preferred method for studying mRNA expression levels, providing nucleotide resolution and …