[PDF][PDF] The technology and biology of single-cell RNA sequencing

AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni… - Molecular cell, 2015 - cell.com
The differences between individual cells can have profound functional consequences, in
both unicellular and multicellular organisms. Recently developed single-cell mRNA …

Defining cell types and states with single-cell genomics

C Trapnell - Genome research, 2015 - genome.cshlp.org
A revolution in cellular measurement technology is under way: For the first time, we have the
ability to monitor global gene regulation in thousands of individual cells in a single …

Single-cell messenger RNA sequencing reveals rare intestinal cell types

D Grün, A Lyubimova, L Kester, K Wiebrands, O Basak… - Nature, 2015 - nature.com
Understanding the development and function of an organ requires the characterization of all
of its cell types. Traditional methods for visualizing and isolating subpopulations of cells are …

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

F Buettner, KN Natarajan, FP Casale, V Proserpio… - Nature …, 2015 - nature.com
Recent technical developments have enabled the transcriptomes of hundreds of cells to be
assayed in an unbiased manner, opening up the possibility that new subpopulations of cells …

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq

P Blakeley, NME Fogarty, I Del Valle… - …, 2015 - journals.biologists.com
Here, we provide fundamental insights into early human development by single-cell RNA-
sequencing of human and mouse preimplantation embryos. We elucidate conserved …

[PDF][PDF] Advances and applications of single-cell sequencing technologies

Y Wang, NE Navin - Molecular cell, 2015 - cell.com
Single-cell sequencing (SCS) has emerged as a powerful new set of technologies for
studying rare cells and delineating complex populations. Over the past 5 years, SCS …

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

EJ Grow, RA Flynn, SL Chavez, NL Bayless… - Nature, 2015 - nature.com
Endogenous retroviruses (ERVs) are remnants of ancient retroviral infections, and comprise
nearly 8% of the human genome. The most recently acquired human ERV is HERVK (HML …

[PDF][PDF] Lineage-specific profiling delineates the emergence and progression of naive pluripotency in mammalian embryogenesis

T Boroviak, R Loos, P Lombard, J Okahara, R Behr… - Developmental cell, 2015 - cell.com
Naive pluripotency is manifest in the preimplantation mammalian embryo. Here we
determine transcriptome dynamics of mouse development from the eight-cell stage to …

Integrated genome and transcriptome sequencing of the same cell

SS Dey, L Kester, B Spanjaard, M Bienko… - Nature …, 2015 - nature.com
Single-cell genomics and single-cell transcriptomics have emerged as powerful tools to
study the biology of single cells at a genome-wide scale. However, a major challenge is to …

SINCERA: a pipeline for single-cell RNA-Seq profiling analysis

M Guo, H Wang, SS Potter, JA Whitsett… - PLoS computational …, 2015 - journals.plos.org
A major challenge in developmental biology is to understand the genetic and cellular
processes/programs driving organ formation and differentiation of the diverse cell types that …