Multidimensional proteomics for cell biology

M Larance, AI Lamond - Nature reviews Molecular cell biology, 2015 - nature.com
The proteome is a dynamic system in which each protein has interconnected properties—
dimensions—that together contribute to the phenotype of a cell. Measuring these properties …

Structure, dynamics, assembly, and evolution of protein complexes

JA Marsh, SA Teichmann - Annual review of biochemistry, 2015 - annualreviews.org
The assembly of individual proteins into functional complexes is fundamental to nearly all
biological processes. In recent decades, many thousands of homomeric and heteromeric …

[HTML][HTML] The BioPlex network: a systematic exploration of the human interactome

EL Huttlin, L Ting, RJ Bruckner, F Gebreab, MP Gygi… - Cell, 2015 - cell.com
Protein interactions form a network whose structure drives cellular function and whose
organization informs biological inquiry. Using high-throughput affinity-purification mass …

[HTML][HTML] A human interactome in three quantitative dimensions organized by stoichiometries and abundances

MY Hein, NC Hubner, I Poser, J Cox, N Nagaraj… - Cell, 2015 - cell.com
The organization of a cell emerges from the interactions in protein networks. The
interactome is critically dependent on the strengths of interactions and the cellular …

The BioGRID interaction database: 2015 update

A Chatr-Aryamontri, BJ Breitkreutz… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
http://thebiogrid. org) is an open access database that houses genetic and protein …

Panorama of ancient metazoan macromolecular complexes

C Wan, B Borgeson, S Phanse, F Tu, K Drew, G Clark… - Nature, 2015 - nature.com
Macromolecular complexes are essential to conserved biological processes, but their
prevalence across animals is unclear. By combining extensive biochemical fractionation …

Fundamentals of protein interaction network mapping

J Snider, M Kotlyar, P Saraon, Z Yao… - Molecular systems …, 2015 - embopress.org
Studying protein interaction networks of all proteins in an organism (“interactomes”) remains
one of the major challenges in modern biomedicine. Such information is crucial to …

[HTML][HTML] A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning

K Kırlı, S Karaca, HJ Dehne, M Samwer, KT Pan… - elife, 2015 - elifesciences.org
CRM1 is a highly conserved, RanGTPase-driven exportin that carries proteins and RNPs
from the nucleus to the cytoplasm. We now explored the cargo-spectrum of CRM1 in depth …

[HTML][HTML] Identification of prostate cancer biomarkers in urinary exosomes

A Øverbye, T Skotland, CJ Koehler, B Thiede… - Oncotarget, 2015 - ncbi.nlm.nih.gov
Exosomes have recently appeared as a novel source of non-invasive cancer biomarkers
since tumour-specific molecules can be found in exosomes isolated from biological fluids …

Principles of assembly reveal a periodic table of protein complexes

SE Ahnert, JA Marsh, H Hernández, CV Robinson… - Science, 2015 - science.org
INTRODUCTION The assembly of proteins into complexes is crucial for most biological
processes. The three-dimensional structures of many thousands of homomeric and …