[HTML][HTML] Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
TJ Morris, S Beck - Methods, 2015 - Elsevier
Abstract The Illumina HumanMethylation450 BeadChip has become a popular platform for
interrogating DNA methylation in epigenome-wide association studies (EWAS) and related …
interrogating DNA methylation in epigenome-wide association studies (EWAS) and related …
Sex differences in DNA methylation assessed by 450 K BeadChip in newborns
Background DNA methylation is an important epigenetic mark that can potentially link early
life exposures to adverse health outcomes later in life. Host factors like sex and age strongly …
life exposures to adverse health outcomes later in life. Host factors like sex and age strongly …
[HTML][HTML] The cerebellum ages slowly according to the epigenetic clock
S Horvath, V Mah, AT Lu, JS Woo, OW Choi… - Aging (Albany …, 2015 - ncbi.nlm.nih.gov
Studies that elucidate why some human tissues age faster than others may shed light on
how we age, and ultimately suggest what interventions may be possible. Here we utilize a …
how we age, and ultimately suggest what interventions may be possible. Here we utilize a …
A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data
DNA methylation plays an important role in disease etiology. The Illumina Infinium
HumanMethylation450 (450K) BeadChip is a widely used platform in large-scale …
HumanMethylation450 (450K) BeadChip is a widely used platform in large-scale …
quantro: a data-driven approach to guide the choice of an appropriate normalization method
SC Hicks, RA Irizarry - Genome biology, 2015 - Springer
Normalization is an essential step in the analysis of high-throughput data. Multi-sample
global normalization methods, such as quantile normalization, have been successfully used …
global normalization methods, such as quantile normalization, have been successfully used …
PON1 as a model for integration of genetic, epigenetic, and expression data on candidate susceptibility genes
Recent genome-and epigenome-wide studies demonstrate that the DNA methylation is
controlled in part by genetics, highlighting the importance of integrating genetic and …
controlled in part by genetics, highlighting the importance of integrating genetic and …
A pooling-based approach to mapping genetic variants associated with DNA methylation
DNA methylation is an epigenetic modification that plays a key role in gene regulation.
Previous studies have investigated its genetic basis by mapping genetic variants that are …
Previous studies have investigated its genetic basis by mapping genetic variants that are …
Relationship between expression and methylation of obesity-related genes in children
Epigenetic control of gene expression in children remains poorly understood, but new
technologies can help elucidate the relationship between expression and DNA methylation …
technologies can help elucidate the relationship between expression and DNA methylation …
A retrospective likelihood approach for efficient integration of multiple omics factors in case‐control association studies
Integrative omics, the joint analysis of outcome and multiple types of omics data, such as
genomics, epigenomics, and transcriptomics data, constitute a promising approach for …
genomics, epigenomics, and transcriptomics data, constitute a promising approach for …
[PDF][PDF] Statistical methods for genetic association studies with response-selective
B Balliu - Statistica Sinica - scholarlypublications …
Data transformations prior to analysis may be beneficial in classification tasks. In this article
we investigate a set of such transformations on 2D graph-data derived from facial images …
we investigate a set of such transformations on 2D graph-data derived from facial images …