The recurrent architecture of tumour initiation, progression and drug sensitivity

A Califano, MJ Alvarez - Nature Reviews Cancer, 2017 - nature.com
Recent studies across multiple tumour types are starting to reveal a recurrent regulatory
architecture in which genomic alterations cluster upstream of functional master regulator …

[HTML][HTML] The many faces of compartmentalized PKA signalosomes

O Torres-Quesada, JE Mayrhofer, E Stefan - Cellular signalling, 2017 - Elsevier
Cellular signal transmission requires the dynamic formation of spatiotemporally controlled
molecular interactions. At the cell surface information is received by receptor complexes and …

[HTML][HTML] Systemic immunity is required for effective cancer immunotherapy

MH Spitzer, Y Carmi, NE Reticker-Flynn, SS Kwek… - Cell, 2017 - cell.com
Immune responses involve coordination across cell types and tissues. However, studies in
cancer immunotherapy have focused heavily on local immune responses in the tumor …

[HTML][HTML] An approach to spatiotemporally resolve protein interaction networks in living cells

BT Lobingier, R Hüttenhain, K Eichel, KB Miller… - Cell, 2017 - cell.com
Cells operate through protein interaction networks organized in space and time. Here, we
describe an approach to resolve both dimensions simultaneously by using proximity …

Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes

K Drew, C Lee, RL Huizar, F Tu, B Borgeson… - Molecular systems …, 2017 - embopress.org
Macromolecular protein complexes carry out many of the essential functions of cells, and
many genetic diseases arise from disrupting the functions of such complexes. Currently …

Modelling the molecular mechanisms of aging

MT Mc Auley, AM Guimera, D Hodgson… - Bioscience …, 2017 - portlandpress.com
The aging process is driven at the cellular level by random molecular damage that slowly
accumulates with age. Although cells possess mechanisms to repair or remove damage …

[HTML][HTML] Interactome-based approaches to human disease

M Caldera, P Buphamalai, F Müller… - Current Opinion in Systems …, 2017 - Elsevier
Recent advances in high-throughput technologies have created exciting opportunities for
systematically investigating the molecular basis of human disease. In addition to a growing …

[HTML][HTML] Methods, tools and current perspectives in proteogenomics

KV Ruggles, K Krug, X Wang, KR Clauser… - Molecular & Cellular …, 2017 - ASBMB
With combined technological advancements in high-throughput next-generation sequencing
and deep mass spectrometry-based proteomics, proteogenomics, ie the integrative analysis …

[HTML][HTML] Differential co-expression analysis reveals a novel prognostic gene module in ovarian cancer

E Gov, KY Arga - Scientific reports, 2017 - nature.com
Ovarian cancer is one of the most significant disease among gynecological disorders that
women suffered from over the centuries. However, disease-specific and effective biomarkers …

Comparative assessment of differential network analysis methods

Y Lichtblau, K Zimmermann… - Briefings in …, 2017 - academic.oup.com
Differential network analysis (DiNA) denotes a recent class of network-based Bioinformatics
algorithms which focus on the differences in network topologies between two states of a cell …