[HTML][HTML] From correlation to causation: analysis of metabolomics data using systems biology approaches

A Rosato, L Tenori, M Cascante, PR De Atauri Carulla… - Metabolomics, 2018 - Springer
Introduction Metabolomics is a well-established tool in systems biology, especially in the top–
down approach. Metabolomics experiments often results in discovery studies that provide …

Gene co-expression analysis for functional classification and gene–disease predictions

S Van Dam, U Vosa, A van der Graaf… - Briefings in …, 2018 - academic.oup.com
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …

A computational framework to integrate high-throughput '-omics' datasets for the identification of potential mechanistic links

HK Pedersen, SK Forslund, V Gudmundsdottir… - Nature protocols, 2018 - nature.com
We recently presented a three-pronged association study that integrated human intestinal
microbiome data derived from shotgun-based sequencing with untargeted serum …

[HTML][HTML] Integrated transcriptomes throughout swine oestrous cycle reveal dynamic changes in reproductive tissues interacting networks

JM Kim, JE Park, I Yoo, J Han, N Kim, WJ Lim… - Scientific reports, 2018 - nature.com
Female fertility is a highly regulated process involving the synchronized activities of multiple
tissues. The underlying genomic regulation of the tissue synchronization is poorly …

Habitual aerobic exercise and circulating proteomic patterns in healthy adults: relation to indicators of healthspan

JR Santos-Parker, KS Santos-Parker… - Journal of Applied …, 2018 - journals.physiology.org
Habitual aerobic exercise enhances physiological function and reduces risk of morbidity and
mortality throughout life, but the underlying molecular mechanisms are largely unknown …

[HTML][HTML] Integrated approach reveals diet, APOE genotype and sex affect immune response in APP mice

KN Nam, CM Wolfe, NF Fitz, F Letronne… - … et Biophysica Acta (BBA …, 2018 - Elsevier
Alzheimer's disease (AD) is a multifactorial neurodegenerative disorder that is influenced by
genetic and environmental risk factors, such as inheritance of ε4 allele of APOE (APOE4) …

FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch

ZD Burkett, NF Day, TH Kimball, CM Aamodt… - Elife, 2018 - elifesciences.org
Human speech is one of the few examples of vocal learning among mammals yet~ half of
avian species exhibit this ability. Its neurogenetic basis is largely unknown beyond a shared …

Identification and functional analysis of a potential key lncRNA involved in fat loss of cancer cachexia

H Liu, T Zhou, B Wang, L Li, D Ye… - Journal of Cellular …, 2018 - Wiley Online Library
Cancer cachexia is a devastating, multifactorial, and irreversible syndrome characterized by
skeletal muscle reduction with or without fat loss. Although much attention has been focused …

[HTML][HTML] ABCA1 haplodeficiency affects the brain transcriptome following traumatic brain injury in mice expressing human APOE isoforms

EL Castranio, CM Wolfe, KN Nam, F Letronne… - Acta neuropathologica …, 2018 - Springer
Expression of human Apolipoprotein E (APOE) modulates the inflammatory response in an
isoform specific manner, with APOE4 isoform eliciting a stronger pro-inflammatory response …

MicroRNA duplication accelerates the recruitment of new targets during vertebrate evolution

J Luo, Y Wang, J Yuan, Z Zhao, J Lu - RNA, 2018 - rnajournal.cshlp.org
The repertoire of miRNAs has considerably expanded during metazoan evolution, and
duplication is an important mechanism for generating new functional miRNAs. However …