Phylogenetic analysis of pathogens is an increasingly powerful way to reduce the spread of
epidemics, including HIV. As a result, phylogenetic approaches are becoming embedded in …

Background HIV-1 genetic sequences can be used to infer viral transmission history and
dynamics. Throughout the United States, HIV-1 sequences from drug resistance testing are …

Drug resistant HIV is a major threat to the long-term efficacy of antiretroviral treatment.
Around 10% of ART-naïve patients in Europe are infected with drug-resistant HIV type 1 …

Background Harm reduction has dramatically reduced HIV incidence among people who
inject drugs (PWID). In Glasgow, Scotland,< 10 infections/year have been diagnosed among …

Background Patients who do not disclose their sexuality, including men who do not disclose
same-sex behaviour, are difficult to characterise through traditional epidemiological …

Background The HIV-1 epidemic in Ethiopia has been shown to be dominated by two
phylogenetically distinct subtype C clades, the Ethiopian (C'-ET) and East African (C-EA) …

We investigated longitudinal viral clustering among and within subjects in a highly
networked cohort of people who inject drugs (PWID). All subjects had estimated dates of …

An exciting new direction in HIV research is centered on using molecular phylogenetics to
understand the social and behavioral drivers of HIV transmission. SPOT was an intervention …

Nucleotide sequences of HIV isolates are obtained routinely to evaluate the presence of
resistance mutations to antiretroviral drugs. But, beyond their clinical use, these and other …

4. Valverde EE, Oster AM, Xu S et al. HIV transmission dynamics among foreign-born
persons in the United States. J Acquir Immune Defic Syndr. 2017; 76: 445–452. 5. Tamura K …