[HTML][HTML] Network medicine in the age of biomedical big data

AR Sonawane, ST Weiss, K Glass, A Sharma - Frontiers in Genetics, 2019 - frontiersin.org
Network medicine is an emerging area of research dealing with molecular and genetic
interactions, network biomarkers of disease, and therapeutic target discovery. Large-scale …

[HTML][HTML] Facing climate change: biotechnology of iconic Mediterranean woody crops

C De Ollas, R Morillón, V Fotopoulos… - Frontiers in Plant …, 2019 - frontiersin.org
The Mediterranean basin is especially sensitive to the adverse outcomes of climate change
and especially to variations in rainfall patterns and the incidence of extremely high …

EPIC: software toolkit for elution profile-based inference of protein complexes

LZM Hu, F Goebels, JH Tan, E Wolf, U Kuzmanov… - Nature …, 2019 - nature.com
Protein complexes are key macromolecular machines of the cell, but their description
remains incomplete. We and others previously reported an experimental strategy for global …

A perturbed gene network containing PI3K–AKT, RAS–ERK and WNT–β-catenin pathways in leukocytes is linked to ASD genetics and symptom severity

VH Gazestani, T Pramparo, S Nalabolu… - Nature …, 2019 - nature.com
Hundreds of genes are implicated in autism spectrum disorder (ASD), but the mechanisms
through which they contribute to ASD pathophysiology remain elusive. Here we analyzed …

[HTML][HTML] Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer

DD Bhuva, J Cursons, GK Smyth, MJ Davis - Genome biology, 2019 - Springer
Background Elucidation of regulatory networks, including identification of regulatory
mechanisms specific to a given biological context, is a key aim in systems biology. This has …

[HTML][HTML] Rewiring of the human mitochondrial interactome during neuronal reprogramming reveals regulators of the respirasome and neurogenesis

MT Moutaoufik, R Malty, S Amin, Q Zhang, S Phanse… - Iscience, 2019 - cell.com
Mitochondrial protein (MP) assemblies undergo alterations during neurogenesis, a complex
process vital in brain homeostasis and disease. Yet which MP assemblies remodel during …

Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS

M Pilarczyk, M Kouril, B Shamsaei, J Vasiliauskas… - BioRxiv, 2019 - biorxiv.org
There are only a few platforms that integrate multiple omics data types, bioinformatics tools,
and interfaces for integrative analyses and visualization that do not require programming …

[HTML][HTML] Gene co-expression network analysis for identifying genetic markers in Parkinson's disease-a three-way comparative approach

G George, S Singh, SB Lokappa, J Varkey - Genomics, 2019 - Elsevier
Parkinson's disease (PD) is a neurodegenerative disorder involving progressive
deterioration of dopaminergic neurons. Although few genetic markers for familial PD are …

Integrating molecular networks with genetic variant interpretation for precision medicine

E Capriotti, K Ozturk, H Carter - Wiley Interdisciplinary Reviews …, 2019 - Wiley Online Library
More reliable and cheaper sequencing technologies have revealed the vast mutational
landscapes characteristic of many phenotypes. The analysis of such genetic variants has led …

Differential network enrichment analysis reveals novel lipid pathways in chronic kidney disease

J Ma, A Karnovsky, F Afshinnia, J Wigginton… - …, 2019 - academic.oup.com
Motivation Functional enrichment testing methods can reduce data comprising hundreds of
altered biomolecules to smaller sets of altered biological 'concepts' that help generate …