Spatiotemporal structure of cell fate decisions in murine neural crest

R Soldatov, M Kaucka, ME Kastriti, J Petersen… - Science, 2019 - science.org
Neural crest cells are embryonic progenitors that generate numerous cell types in
vertebrates. With single-cell analysis, we show that mouse trunk neural crest cells become …

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

M Lizio, I Abugessaisa, S Noguchi, A Kondo… - Nucleic acids …, 2019 - academic.oup.com
The FANTOM web resource (http://fantom. gsc. riken. jp/) was developed to provide easy
access to the data produced by the FANTOM project. It contains the most complete and …

[HTML][HTML] A framework for identification of on-and off-target transcriptional responses to drug treatment

Y Huang, M Furuno, T Arakawa, S Takizawa… - Scientific reports, 2019 - nature.com
Owing to safety concerns or insufficient efficacy, few drug candidates are approved for
marketing. Drugs already on the market may be withdrawn due to adverse effects (AEs) …

Networks of mRNA processing and alternative splicing regulation in health and disease

P Jordan, V Gonçalves, S Fernandes… - The mRNA Metabolism …, 2019 - Springer
Abstract mRNA processing events introduce an intricate layer of complexity into gene
expression processes, supporting a tremendous level of diversification of the genome's …

Multilayer regulation of CD4 T cell subset differentiation in the era of single cell genomics

W Sungnak, C Wang, VK Kuchroo - Advances in Immunology, 2019 - Elsevier
CD4 T cells are major immune cell types that mediate effector responses appropriate for
diverse incoming threats. These cells have been categorized into different subsets based on …

[HTML][HTML] Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases

S Zucchelli, S Fedele, P Vatta, R Calligaris… - Molecular …, 2019 - Springer
Natural antisense transcripts are common features of mammalian genes providing
additional regulatory layers of gene expression. A comprehensive description of antisense …

The AAA+ ATPase RUVBL2 is essential for the oncogenic function of c-MYB in acute myeloid leukemia

E Armenteros-Monterroso, L Zhao, L Gasparoli… - Leukemia, 2019 - nature.com
Subtype-specific leukemia oncogenes drive aberrant gene expression profiles that converge
on common essential mediators to ensure leukemia self-renewal and inhibition of …

[HTML][HTML] Experimental and computational approaches to direct cell reprogramming: recent advancement and future challenges

R Gam, M Sung, A Prasad Pandurangan - Cells, 2019 - mdpi.com
The process of direct cell reprogramming, also named transdifferentiation, permits for the
conversion of one mature cell type directly into another, without returning to a …

Target-induced steric hindrance protection of DNAzyme junctions for completely enzyme-free and amplified sensing of transcription factors

M Zou, X Li, D Li, R Yuan, Y Xiang - Sensors and Actuators B: Chemical, 2019 - Elsevier
The interactions between proteins and DNA play critical roles in numerous essential cellular
activities. Therefore, sensitive investigation of these interactions is crucial for the study of …

Noise propagation shapes condition-dependent gene expression noise in Escherichia coli

A Urchueguía, L Galbusera, G Bellement, T Julou… - BioRxiv, 2019 - biorxiv.org
Although it is well appreciated that gene expression is inherently noisy and that
transcriptional noise is encoded in a promoter's sequence, little is known about the variation …